BAC Information

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BAC

Clone NameMSMg01-102P16
Chromosome1 (Build37)
Map Location 48,673,083 - 48,673,365
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666869, LOC546734, LOC674566, LOC100041936
Downstream geneLOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102P16.T7 (MSMg01no102_p16.b1)MSMg01-102P16.TJ (MSMg01no102_p16.g1)
ACCAG317979AG317980
length845734
length of high quality
(start - end)
---283 (73 - 355)
definitionCHROMAT_FILE: MSMg01no102_p16.b1 PHD_FILE: MSMg01no102_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:44 2005CHROMAT_FILE: MSMg01no102_p16.g1 PHD_FILE: MSMg01no102_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCNNCAATGAAA
AGNAAGAATACAAATTTAGAGGCCGCTTCTAAAGTCNCTTCCAAAAGAGG
AGGNGNGGAAGAAANATTAGCATAAAAAGGGAGAAATAGCTGTTCCATAT
CTTAAATGATCATAATACAGTAATTGTGCCCCCAGTAGAGAAAGTCAAGA
AAAAATTATATGGAACTATTATGATATTGCTTGTCAAAAGATTCACTAGG
GACACATTAAAAACAGTCTTTACATATAAAAAAACAAGCTGTAAGTGAAC
ACAATTAAAAATGTCTAACGGAACAATAAATGTTACAGGACTGTTACCAC
ACAAACCTAAATGAAACCCAAAAGAGTTATTTTTTTAGTAAAGAACCGGG
CCGATTCCGTGGAGTTTTTTTTTTTTCCCCCCCCCCCCCCCCGGTTATTT
TTTTTATATGAAGTAGATTCGACGTCCTACCAAAAAAAAAAAAAAACATG
TGGTGGGGGGGGGGGCATACCTAGTACATACAACAAAACAATAATTCTTT
ATTAATTAAACATATCTTCCATAAGTTAGATAGTAAGAAATTTGTTTCGA
ACTGTTCTTCCCACATTATAAAATCCTATTATCTTCATTGTCTTACCTCT
AATCAACCCCCGTAAACCCATAATTATATATACAGATATCAATAATGTAA
TTATTCAAACGACGAATAAATACTTCGGTCACCCTGCTTTTTTTTATCCT
ATGTTCCTTTTTTCTCTCTTGAATATGCGCTTTCCTCTATTTTACCTTTT
ATTATTCACATAAAATCGAAAGTCTTATATTTCCTATTTTAATTA
TGAAGTGATAGCCTGGCGGCGCCTGGCTTCCAAATAAGGTGACCTATAGA
AGGATTCCCAGAAAACACTTTGTAGACCAGGCAGGCTGGCCTCGAACTCA
GAAATCCTCCTGCCTCTGCCTTCCAAGTGCTGGGATTAAAGGCATGTTCC
ACCACACCGGTGAAAAATTTAATTATTGACTCAAGAGAATTTCAAGAATG
TTTCAAAAGGAGAATCATAGAGAAATTGATGGTATTTTGGGTATTTGGAG
TAATGGAATAGGTAGTCAGTCCTACATCACGTATATTCTGTCTAATTGTT
TCTGAGTTTCTCTGAATGTTTTTTTAGATCTTTACTTTCATGATCTCTGA
GTTAGGTAATAGTTCTCCCCACCCCCCACACCTATGACTTAAATTACACT
TTTCTTAAAATCAGGTTAAAATATTTTATAGAAAATATTTTTTAGAAAGA
AATACATTATAACTTTATAAAACAATATCTGTTTACAGAATATTAAAAGA
ATAATTCACAGACAAAGTACAGATCGAATGACCAATAAATAATTGAAAAA
TTTCTGAATACAATCTGTAAATAGTTTTTAAAGAGTTAAGTAATTAAACC
TTTGTTAAAACCCCATATGTTATTGTCATTAATACATAATATTATCACCA
GTGAACTTGAACTTGATTTCCATTCTATCATTACACCTTGTCTTTTTATG
AAAGCCTCAAATATGTTTCCGAGTAAAACATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_p16.g1 MSMg01no102_p16.g1 CHROMAT_FILE:
MSMg01no102_p16.g1 PHD_FILE: MSMg01no102_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:44 2005
         (283 letters)



>mm_chr1_48672883_48673565
          Length = 683

 Score =  509 bits (263), Expect = e-148
 Identities = 278/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaccaggcaggctggcctcgaactcagaaatcctcctgcctctgccttccaagtgctg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tagaccaggcaggctggcctcgaactcagaaatcctcctgtctctgccttccaagtgctg 260

                                                                       
Query: 61  ggattaaaggcatgttccaccacaccggtgaaaaatttaattattgactcaagagaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggattaaaggcatgttccaccacaccggtgaaaaatttaattattgactcaagagaattt 320

                                                                       
Query: 121 caagaatgtttcaaaaggagaatcatagagaaattgatggtattttgggtatttggagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagaatgtttcaaaaggagaatcatagagaaattgatggtattttgggtatttggagta 380

                                                                       
Query: 181 atggaataggtagtcagtcctacatcacgtatattctgtctaattgtttctgagtttctc 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 atggaataggtagtcagtcctacatcacttatattctgtctaattgtttctgagtttctc 440

                                                      
Query: 241 tgaatgtttttttagatctttactttcatgatctctgagttag 283
           ||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatgccattttagatctttactttcatgatctctgagttag 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)