BAC Information

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BAC

Clone NameMSMg01-102P18
Chromosome1 (Build37)
Map Location 115,750,409 - 115,750,708
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102P18.T7 (MSMg01no102_p18.b1)MSMg01-102P18.TJ (MSMg01no102_p18.g1)
ACCAG317982AG317983
length768736
length of high quality
(start - end)
282 (135 - 416)300 (74 - 373)
definitionCHROMAT_FILE: MSMg01no102_p18.b1 PHD_FILE: MSMg01no102_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:44 2005CHROMAT_FILE: MSMg01no102_p18.g1 PHD_FILE: MSMg01no102_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGNNNNNNNNNNNNNNNNNNCNNNNCNNNCCNCCCCNNCCCCCTTCTT
TCTNNNACTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAG
AGGATCCGCGGAATTCTTTGTTCCCATAAGAGGCCCATTTTTTAATGGGG
TTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATCGGA
TATTAGTCCCCTATCTGATTTGGGATAGGAAAATATCCTTTCCCTATCTG
TTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTT
TGCAATTTTATAAGGTCCCATTTATCGATTCTCCATCTTACAGCACAAGC
CATTGCTGTTCTATTCAGGAATTTTTCTTCTGTACCCATATCTTCGAGGC
TTTTCCCTACTTTCTCCTCTATAAGCCTCCCCGTCCCTCGTTTTATGTGG
AGTTCCTTAATCCACTTAGATTTGACCATAGAACAAGGAAATAGGAGCGG
ATCAATTCGCATTTTTCTACATGATAACCACCAGTTGTGCCAGCACCATT
TGTTGAAAATGCTGTCTTTTTTCCACCTGATGGTTCCAGTTCCCTTGTCC
AAGATCATGTGACCTTACGTGTGTGGGTTTCTCTCTGGGCCTACAATTCT
GTTCAATTGGTCTACTTGTCTGTATTTATATCTATTCCATGCTCTTTTTA
TTCCTTTTGCTTTGTTAGACTATTTATATGTCTCGGCAGTATGTTATCTC
CATATTTTCATCTTTTCG
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCGAATTCTTGCTGTAGTCATTGGTCATTGCATTTGTCG
CACCCTCTCAATAAGTGTCTGGCTTTCAGCTATTCTAAAATGTTCCCAGT
GGACACTTCTACTGGCCCAGAAATCAGACCTGAGAACCCCTGTCCTAGAG
ATATCATTTCCAACAAACGTAGAACAAATGGCTACAAATGTATTGTCGTT
AGAAACCTGCAATTTTCCTGGGAGACTATGTCTATGCAGCCCTAGAAATA
AGAATAAGTATTAAGAGTTGATACTTGTAAGTGGATAAGCATTCCATGGC
ACTTAAAAATTGTATGTGGTCTACACAGGCAATAACATCAGTCAAACAAA
TGCCCTGCAAACATGAATATCTGCATTTATCCACAGAGTCTAAACAACAA
AGCAGGCAAATGCTTGTAATCCAATAGATAATAAAGGGAAAAGATCTTTT
TAAATTGCATATTATCTTCTGCTTACTGTTTATGTTTAAATGAAAATAAT
TATAGGACAGATGCATGGTGAGAATTGAGGTAAATATACAATTTACATAA
AAGAGCTCAGACCAAAATATATTTTATGAAAGCAACCAGTCATATAATGA
GGTGAACGATTATGCCAAAGGATTCTTATAGCTTGCTAGCCAGCCAGTCT
AGCCTACTTCCTGAAATAGAAACCAGTGAATGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_p18.g1 MSMg01no102_p18.g1 CHROMAT_FILE:
MSMg01no102_p18.g1 PHD_FILE: MSMg01no102_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:44 2005
         (300 letters)



>mm_chr1_115750209_115750908
          Length = 700

 Score =  534 bits (276), Expect = e-156
 Identities = 294/300 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagtcattggtcattgcatttgtcgcaccctctcaataagtgtctggctttcagctat 60
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 tgtagtcattggtcattgcagttgtcacaccctctcaataagtgtctggctttcagctat 441

                                                                       
Query: 61  tctaaaatgttcccagtggacacttctactggcccagaaatcagacctgagaacccctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctaaaatgttcccagtggacacttctactggcccagaaatcagacctgagaacccctgt 381

                                                                       
Query: 121 cctagagatatcatttccaacaaacgtagaacaaatggctacaaatgtattgtcgttaga 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 380 cctagagatatcatttccaacaaaagtagaacaaatggctacaaatgtattgtcgttaga 321

                                                                       
Query: 181 aacctgcaattttcctgggagactatgtctatgcagccctagaaataagaataagtatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aacctgcaattttcctgggagactatgtctatgcagccctagaaataagaataagtatta 261

                                                                       
Query: 241 agagttgatacttgtaagtggataagcattccatggcacttaaaaattgtatgtggtcta 300
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agagttgatacagggaagtggataagcattccatggcacttaaaaattgtatgtggtcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)