BAC Information

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BAC

Clone NameMSMg01-103A07
Chromosome1 (Build37)
Map Location 3,421,706 - 3,422,025
singlet/doubletsinglet
Overlap geneXkr4
Upstream genenone
Downstream geneLOC100038975, LOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103A07.T7 (MSMg01no103_a07.b1)MSMg01-103A07.TJ (MSMg01no103_a07.g1)
ACCAG318006AG318007
length714720
length of high quality
(start - end)
324 (47 - 370)392 (78 - 469)
definitionCHROMAT_FILE: MSMg01no103_a07.b1 PHD_FILE: MSMg01no103_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:47 2005CHROMAT_FILE: MSMg01no103_a07.g1 PHD_FILE: MSMg01no103_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCTTTCCATGTCTCATGCATGCTTACAGTTCTTCTTATGGATGGCT
TGATTCACATAAAGCCCAAGAACATCCCCGTAACTTAGCTCAAGTTTTTC
CAACTTCTGTCCACTCTACAGGGATTATGATCTCTGAAGTTTTTGTTATA
TTTCCATAGCACATGGAAACATTCTTAATGCTTGATGATTTCTATTTAAT
GGATAGAAAAGAGACTTTGTTGTGAATGCTGACTCTGATCCATTGCAAGC
AACATTGCTGAGGATTCTGGGGTAGCTACTGAGTTCTCTGGGACAGGTGA
GTGACATGGCCCATGGATGAGCAATGACCTAGTGCAACAAGATTTTTTTT
TGGTTTTGGTTTTTCATGTCAGGGTTTCTCTGTGTATCCCTGGCTGTCCT
GGAACTCATTCTGTAGACCAGGCTGGCCACGAACTCAGAAATTCGCCTGC
CTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCAACACCTGGC
AACAAGATTTTGCTTTGAGTTACTTTTTTGGAATTTTGTCTTAACTGTCT
CATTACATTGACATTAAAGTAGCAATACCATGGCTTTCCCTCTCCTTTAT
GTCTACTAAGTCTAAATCTTGAATGAATAATCACAATTTAAAGCTTCCAT
ATGAAATTTTCATG
NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATATATCTACACTGAGGATCTGT
AAGGTAAACAAACAAACAAATAAATAAACAAACTCAACCCAAACAAACAA
GTCCGACAAGGCATTTTGAAATAAAGAACCTACAAATGTGTCTTAGAGTC
CATTTTGTGTTGGCCATTTACTGCTGCTGAGCCTAGAACATGCCCTTAAG
AGTGGTTTGTATCCCAAGTGAGACTCATTTGAGGAAAACTAATTGTTCCT
TTGTGAGATATTACCAATAACTTGTAAATAGCTTCTGGGTTAGGTTGGGG
ACTTGTGTCCACTTCTCTCAGTTCCAGGATCCCATCTTAGACAGACTCAT
GCAGACTATGATACCTCAGTCTCCGTGAGTTCATATGTACATTGGTCCTT
CCTAGCTCCTAAATACCTGTCCTCAGGCTTTAGAGATCTCTGTAGGAGTC
AGAAAGACTTGTAAGAACCAGAAGGTTTACATACCACGAATATTAGTTTG
CATTACTTAAGAGCCTAATTTCATTCCCAGCTATCTGTTACAACCCTTGC
ACCACATATCCCTAGCACTCTGACCCCGTATATGCCACTATTATGTGTTG
TGCTTTTGTACGCTTTCTTCTCACACCATGTCCCACATTTCCCATTACGT
ATAGATTGCCCGCCCTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_a07.b1 MSMg01no103_a07.b1 CHROMAT_FILE:
MSMg01no103_a07.b1 PHD_FILE: MSMg01no103_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:47 2005
         (324 letters)



>mm_chr1_3421502_3422225
          Length = 724

 Score =  582 bits (301), Expect = e-171
 Identities = 316/321 (98%), Gaps = 2/321 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccatgtct-catgcatgcttacagttcttcttatggatggcttgattcaca 63
           |||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttccatggcttc-tgcatgcttacagttcttcttatggatggcttgattcaca 263

                                                                       
Query: 64  taaagcccaagaacatccccgtaacttagctcaagtttttccaacttctgtccactctac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaagcccaagaacatccccgtaacttagctcaagtttttccaacttctgtccactctac 323

                                                                       
Query: 124 agggattatgatctctgaagtttttgttatatttccatagcacatggaaacattcttaat 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agggattataatctctgaagtttttgttatatttccatagcacatggaaacattcttaat 383

                                                                       
Query: 184 gcttgatgatttctatttaatggatagaaaagagactttgttgtgaatgctgactctgat 243
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcttgatgatttctaattaatggatagaaaagagactttgttgtgaatgctgactctgat 443

                                                                       
Query: 244 ccattgcaagcaacattgctgaggattctggggtagctactgagttctctgggacaggtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccattgcaagcaacattgctgaggattctggggtagctactgagttctctgggacaggtg 503

                                
Query: 304 agtgacatggcccatggatga 324
           |||||||||||||||||||||
Sbjct: 504 agtgacatggcccatggatga 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)