BAC Information

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BAC

Clone NameMSMg01-103H18
Chromosome1 (Build37)
Map Location 195,189,554 - 195,189,830
singlet/doubletsinglet
Overlap geneCamk1g
Upstream geneKcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3
Downstream geneLOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103H18.T7 (MSMg01no103_h18.b1)MSMg01-103H18.TJ (MSMg01no103_h18.g1)
ACCAG318340AG318341
length754713
length of high quality
(start - end)
157 (91 - 247)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no103_h18.b1 PHD_FILE: MSMg01no103_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:25 2005CHROMAT_FILE: MSMg01no103_h18.g1 PHD_FILE: MSMg01no103_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATACTCCATCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCC
GAAAATGGGCGGAATTCCAGACAGTTTTCCTCGAGACGATTAAGCCCATG
CCCACAGTGTCATACCTACTCCAACAAGGCCACACCTTTAAACAGTGTCA
CTCCCTGGGTCAAGCATATACAAACCATCACAAGTGCCTAAGGCATATTT
AAAACTGTAAAGGCTGCGTGTGTCTTTCATCCAGGAATATAATATATTCT
AGTTTAAAGCTGATGAATAAACCTTGGGCCACTATATTAATATTCTCTAC
TAAACACATGTATGCAAAATACTCATGCACATAAAGTATTTTTATTAATA
AGACGCTTTGGCGATCCGAAGAGTACTTAATGTTATAGCACAACCACTGC
CTTTGATTCCTATCATATACATATCGGATTCCCCCCCCTTGTGATTTTGT
ATTCTTTTACTTTTTATGTCCTCTTCCCTTGCCCGAGGCTTTTATTTGTC
GTCCTGATAAATGTAAAGCCAATCCTCACTTACCTAAAACCCCCTACACC
CTTTACACGTTTGCAAACTGATTACCAGTCCCTATATTATCCATGTTATT
CGACCTCTCATTAATGATTATTGTAAATTACGTCGAAGGTAAAAATAAAC
GAACATCCTTTCTATTCCACTAATTATTGATTCCTTCTTATTAACCCTTT
TCTTCTATTTACCTAATAACCACTCTCTTTCTAATTACAATACACTTTAT
CCAT
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAATCTGCAAAGGGCCTGACACCCTAT
CAGTCCTCCTCAGGGCACCTGCCCCACCCAGCCCAAGAGGTTAATATGGA
GCAGAGAGAGGATTTGAACCCCAGTTCCAAACCCGTGCTCTTCACAGAGC
TGCAGAAACACAGGATTTTGTGCACATGTGTGTAGGCATGTGTGAGTGCA
GTTGAGTGTGTACATATGTAAAGACCAGAGAACAGCCTCAGCTGTCATTC
TTCAGGGGCCTCGCCTTGTTTCTTGCTTTGTTTTGTTTATTGAGACCTAG
AGCTCCCTGGGTGCAATAGGCTAGCCCAGCAGTGAACCCAACCAGTCCTC
CTCCCCAGGGCTGGGGTCCCAAGCGAGTGCTACTCTCCTCAGCTTTTCCC
CGAGATCGAACACAGGTCCTCATGCCTCTATGATAATCACTTTACTGGCT
GCATTCTCTCCACAGACTTCTAAAAGGCCTCAAGATTTTATAGACATTGT
TTTTTATTTAAGGTGGCCTCAGACAGACAGTCCCTGTCTCACAGGAACAC
CCACTACACACATGCTCTCTTCTCTCTGTCCTGTTTATGATCCACGTCGT
TGGCTGATCTGCTCTTTCCCTGCCCCTTGGACACTCCCCACCCATGTTCC
CTGTTTGCGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_h18.g1 MSMg01no103_h18.g1 CHROMAT_FILE:
MSMg01no103_h18.g1 PHD_FILE: MSMg01no103_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:25 2005
         (291 letters)



>mm_chr1_195189190_195189882
          Length = 693

 Score =  482 bits (249), Expect = e-140
 Identities = 273/287 (95%), Gaps = 10/287 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatctgcaaagggcctgacaccctatcagtcctcctcagggcacctgccccacccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agaatctgcaaagggcctgacaccctatcagtcctcctcagggcacctgccccacccagc 582

                                                                       
Query: 61  ccaagaggttaatatggagcagagagaggatttgaaccccagttccaaacccgtgctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 581 ccaagaggttaatatggagcagagagaggatttgaaccccagttccaaacctgtgctctt 522

                                                                       
Query: 121 cacagagctgcagaaacacaggattttgtgcacatgtgtgtaggcatgtgtgagtgcagt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||          
Sbjct: 521 cacagagctgaagaaacacaggattttgtgcacatgtgtgtaggcatgtg---------- 472

                                                                       
Query: 181 tgagtgtgtacatatgtaaagaccagagaacagcctcagctgtcattcttcaggggcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgagtgtgtacatatgtaaagaccagagaacagcctcagctgtcattcttcaggggcctc 412

                                                          
Query: 241 gccttgtttcttgctttgttttgtttattgagacctagagctccctg 287
           |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gttttgtttcttgctttgttttgtttattgagacctagagctccctg 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 693
Length adjustment: 9
Effective length of query: 282
Effective length of database: 684
Effective search space:   192888
Effective search space used:   192888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)