BAC Information

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BAC

Clone NameMSMg01-103N09
Chromosome1 (Build37)
Map Location 77,246,895 - 77,247,144
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps
Downstream geneEpha4, LOC100039330, Pax3, LOC100039210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103N09.T7 (MSMg01no103_n09.b1)MSMg01-103N09.TJ (MSMg01no103_n09.g1)
ACCAG318606AG318607
length716709
length of high quality
(start - end)
251 (73 - 323)267 (72 - 338)
definitionCHROMAT_FILE: MSMg01no103_n09.b1 PHD_FILE: MSMg01no103_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:52 2005CHROMAT_FILE: MSMg01no103_n09.g1 PHD_FILE: MSMg01no103_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCTGTTTCCGAGAAGAGAAACTTGCTTCCCTCCAGGCAGT
GATCATGCCTCAGACTTGGTTTTAGTGCTCACCTCACCCTCCAGAATCAT
CTCTGAGTTCCCACCACCCCCACCCCACTCTGCCATATTGACTCTGCATT
CCTCAGGTCTGAGGTTAGAGTTTGGCTGACCCTTCACATGAGGGCCAGTG
CCAAGGTACACCCATTGGAAAGGCTCTCCATTTCCTAACATTCTTGTCTG
TAGATTGTTCTACTTGACTTTGTTCTATAACTTGCTAAGTGTGTATTGAA
CATTCCTAATACTATTTTATGACACCCCCTATAGTTCAAAACTCTAAGAA
CTTTTAAGCATTGACATGATGTCTCAAATGGAAAAAGTTCATCCCTGATC
TCTGGTGATAGATCACAGACACCACCCGCTTCATAAATATTGCATAAAGT
TACTCTCAGCTTATGTTTACCAGTTGTATATGATTATAAAGACACTCTAC
GTTTACATCCCGCCTTTTCTTCATGACACCTCACGACATTTATTTACCAT
AACTTCTATTATCTGATGACACTCCATGTCTTAAGCACCTCCGGCCCCTA
TCTTCCCATATAGGGATACCTTAACCTCATACAAATGTGACCAGTGCCGG
CTTTGCCCCTCTCGAA
CCGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCTCTGAAATTCTTGCCTACTTTGCTACATTGACTCAAA
GCTGTTCCTGGAAAAGAATGATGGAGATGGCTCAGTGAGATGGCTCAGGA
GAAAAAGATTCCTACTTCCAAGACTGATGACCTGGTATTAATCTCTGGGT
ACTAAGTGATGAAAAAATAAAGCCAAATCCTGCATGTTGTCTTCTGACCT
CCACACGCGCTCCATGGCACATGTGTCTCACCCACATACATGCGCATACA
CATAATAAAGAAAGTAAGATTATTTTTTAACAAAACCAACGGGCAGTTAA
CAAATAATGTCAGACATCTTTTTATACCATATGTTTAAAACGTTTTAAGT
GTGTAAATATAGCTAAGCAATAAATGAAATAAATTTAATATGTCTTGAGC
TGTACCTCCTACCCTTTCTATATGACAAGCTTTTCTTTATATGGATATTA
CTTTGTGTGGAGCCAGATAATGACTTTTGTTTTCTATCAGATATGAAGAA
CAGAAAACACGGACTGGAGAGATAGCTCACAAACTAACAGCGTCTTCTGT
TCTTGCAGAAGACCGGTGTTCGGTTCCCAACTCCCACATCAGGCAGCTCA
CAACTCCAACTCCGGGTAAGAACATCCTCTTCTGGACTCCTCCCTCCCTA
TACTCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_n09.b1 MSMg01no103_n09.b1 CHROMAT_FILE:
MSMg01no103_n09.b1 PHD_FILE: MSMg01no103_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:52 2005
         (251 letters)



>mm_chr1_77246695_77247345
          Length = 651

 Score =  453 bits (234), Expect = e-132
 Identities = 246/250 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagaaacttgcttccctccaggcagtgatcatgcctcagacttggttttagtgctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aagagaaacttgcttccctccaggcagtgatcatgcctcagacttggttttagtgctcac 391

                                                                       
Query: 61  ctcaccctccagaatcatctctgagttcccaccacccccaccccactctgccatattgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctcaccctccagaatcatctctgagttcccaccacccccaccccactctgccatattgac 331

                                                                       
Query: 121 tctgcattcctcaggtctgaggttagagtttggctgacccttcacatgagggccagtgcc 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 330 tctgcattcctcaggtctgaggttagagttttgctgacccttcacatgagggccagtgcc 271

                                                                       
Query: 181 aaggtacacccattggaaaggctctccatttcctaacattcttgtctgtagattgttcta 240
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 270 aagggacacccattggaaaggctctccatttcctgacattcttgtctgtagattgttcta 211

                     
Query: 241 cttgactttg 250
           ||||| ||||
Sbjct: 210 cttgagtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)