BAC Information

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BAC

Clone NameMSMg01-103O09
Chromosome1 (Build37)
Map Location 25,351,047 - 25,359,830
singlet/doubletdoublet
Overlap geneBai3
Upstream geneCol19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171
Downstream geneLOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103O09.T7 (MSMg01no103_o09.b1)MSMg01-103O09.TJ (MSMg01no103_o09.g1)
ACCAG318652AG318653
length723705
length of high quality
(start - end)		681 (43 - 723)632 (74 - 705)
definitionCHROMAT_FILE: MSMg01no103_o09.b1 PHD_FILE: MSMg01no103_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:57 2005CHROMAT_FILE: MSMg01no103_o09.g1 PHD_FILE: MSMg01no103_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,359,154 - 25,359,830)(25,351,047 - 25,351,677)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTATTATCACTTGAAGCTAGGGGGCAGGAGGGACCCTCAGGTCTGGA
AGTTTGGCTTTTGGGAGCTGAAATAAGAAGCATTAGAACCAATTCCCAAT
ACTGCTGAATTTAAAATGATTAAGCAGCCAAACTATCCTATGGAATCATC
TTGCACGGGTTCTGTGGAGAGAGATCACAGGTCATTTGCAAAGTGGATTC
TTTTATGAAATTCTATACAATTTCATTCAACACAATCTTCAGGCTTCACT
TTAGTGGAGCCATTTCTAGTTTTAACCATGGCGTTCTCTGAAATTCCAAA
GTCATTAGTATCTAATGAGACATCTCTCAGGTATAGCCTTATGATCTTGT
GGTGTTCTCCACTGGAGAAAATGAGAGAAACAGCAAAATCATTTCTCTTG
AGAGGTCTTGTGAGGCAGGATTTGTGCAATGCAGCTTTGTGTTTCAGCAG
TTTTCCCAGTGTCTGTCAGAAGGTAGCCCTCCTCTACTCTGTATCCCCTT
TGATGGTGATTTCCTTGGGAATTTGTGTGTTTGTCAGTTCCAACCAAGGC
AAGGCCTGCTCATGGGAAGGGACCATGTCTCCTTTTTCTTTATTGCTCCC
GAACCTGTCTTTCTGACTATTACTTTCTGATTTGTATACTTTAGGTTCTC
ATACAATTATTTTCTTGACAGTC

NNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGTTTTGAAGAGTTTGATCAACTTCATG
ATTTCTTTATCGGGCAGAAATGACACTTCTGGATATTTCTATATTCTCTG
AACCACTTGGCTTTGGTAGAAATTAAACAAATCACCAGTGGATAGGAGGA
TACATAGTGCTGTGGTAGGAAACAAAAGAGGCAGATAGACCTATTCAGGC
AGAATTCAACTAGGAAGGCTGAGAAATTAGAGTGAGTTCTTGAGACAGAG
AAGGTTTTCTAGAGGTCTTTTGAGTGTGATGAAATACTGTTTGTGTGGCA
TGAAGGAGAAGAGGGAACACTTCCTGTGAATGCTGAAGGTATGCTGTTGA
GATCAGCAACATTTGAAGAGTGCACATCTGGGGTCTTTTTAGCAAATGCT
TTATTTTCAACATTCACTTGAGCTGGAATGGTTAGAGGCAGAAGTCTCAT
ATCTGGCCATGTTATAATAATTTAGAAAATTACTTCTGAGTATCTCCAAG
CAATTCAGTCTAAAATACCAGTAAAATATTCCTGACATTTCCACATTCTA
GGGATCCCCAAGAACAAGAGTAAAGGAAATCTATCCCAAACTTCTCCTTA
GGGTTAACCTGCCCTCATCAATGGTGATCAGAATTAGTAGTGCCTCCAAG
ATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_o09.b1 MSMg01no103_o09.b1 CHROMAT_FILE:
MSMg01no103_o09.b1 PHD_FILE: MSMg01no103_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:57 2005
         (681 letters)



>mm_chr1_25358845_25359925
          Length = 1081

 Score = 1294 bits (669), Expect = 0.0
 Identities = 675/677 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttattatcacttgaagctagggggcaggagggaccctcaggtctggaagttt 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ggaattctttattatcagttgaagctagggggcaggagggaccctcaggtctggaagttt 927

                                                                       
Query: 64  ggcttttgggagctgaaataagaagcattagaaccaattcccaatactgctgaatttaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 ggcttttgggagctgaaataagaagcattagaaccaattcccaatactgctgaatttaaa 867

                                                                       
Query: 124 atgattaagcagccaaactatcctatggaatcatcttgcacgggttctgtggagagagat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 atgattaagcagccaaactatcctatggaatcatcttgcacgggttctgtggagagagat 807

                                                                       
Query: 184 cacaggtcatttgcaaagtggattcttttatgaaattctatacaatttcattcaacacaa 243
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 806 cacaggtcatttgcaaagtggattcttttgtgaaattctatacaatttcattcaacacaa 747

                                                                       
Query: 244 tcttcaggcttcactttagtggagccatttctagttttaaccatggcgttctctgaaatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcttcaggcttcactttagtggagccatttctagttttaaccatggcgttctctgaaatt 687

                                                                       
Query: 304 ccaaagtcattagtatctaatgagacatctctcaggtatagccttatgatcttgtggtgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccaaagtcattagtatctaatgagacatctctcaggtatagccttatgatcttgtggtgt 627

                                                                       
Query: 364 tctccactggagaaaatgagagaaacagcaaaatcatttctcttgagaggtcttgtgagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tctccactggagaaaatgagagaaacagcaaaatcatttctcttgagaggtcttgtgagg 567

                                                                       
Query: 424 caggatttgtgcaatgcagctttgtgtttcagcagttttcccagtgtctgtcagaaggta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 caggatttgtgcaatgcagctttgtgtttcagcagttttcccagtgtctgtcagaaggta 507

                                                                       
Query: 484 gccctcctctactctgtatcccctttgatggtgatttccttgggaatttgtgtgtttgtc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gccctcctctactctgtatcccctttgatggtgatttccttgggaatttgtgtgtttgtc 447

                                                                       
Query: 544 agttccaaccaaggcaaggcctgctcatgggaagggaccatgtctcctttttctttattg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agttccaaccaaggcaaggcctgctcatgggaagggaccatgtctcctttttctttattg 387

                                                                       
Query: 604 ctcccgaacctgtctttctgactattactttctgatttgtatactttaggttctcataca 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctcccgaacctgtctttctgactattactttctgatttgtatactttaggttctcataca 327

                            
Query: 664 attattttcttgacagt 680
           |||||||||||||||||
Sbjct: 326 attattttcttgacagt 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no103_o09.g1 MSMg01no103_o09.g1 CHROMAT_FILE:
MSMg01no103_o09.g1 PHD_FILE: MSMg01no103_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:57 2005
         (632 letters)



>mm_chr1_25350847_25351878
          Length = 1032

 Score = 1181 bits (611), Expect = 0.0
 Identities = 626/631 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttttgaagagtttgatcaacttcatgatttctttatcgggcagaaatgacacttctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttttgaagagtttgatcaacttcatgatttctttatcgggcagaaatgacacttctgga 260

                                                                       
Query: 61  tatttctatattctctgaaccacttggctttggtagaaattaaacaaatcaccagtggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttctatattctctgaaccacttggctttggtagaaattaaacaaatcaccagtggat 320

                                                                       
Query: 121 aggaggatacatagtgctgtggtaggaaacaaaagaggcagatagacctattcaggcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaggatacatagtgctgtggtaggaaacaaaagaggcagatagacctattcaggcaga 380

                                                                       
Query: 181 attcaactaggaaggctgagaaattagagtgagttcttgagacagagaaggttttctaga 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 attcaactaggaaggctgagaaattacagtgagttcttgagacagagaaggttttctaga 440

                                                                       
Query: 241 ggtcttttgagtgtgatgaaatactgtttgtgtggcatgaaggagaagagggaacacttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcttttgagtgtgatgaaatactgtttgtgtggcatgaaggagaagagggaacacttc 500

                                                                       
Query: 301 ctgtgaatgctgaaggtatgctgttgagatcagcaacatttgaagagtgcacatctgggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgaatgctgaaggtatgctgttgagatcagcaacatttgaagagtgcacatctgggg 560

                                                                       
Query: 361 tctttttagcaaatgctttattttcaacattcacttgagctggaatggttagaggcagaa 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctttttagcaaatgttttattttcaacattcacttgagctggaatggttagaggcagaa 620

                                                                       
Query: 421 gtctcatatctggccatgttataataatttagaaaattacttctgagtatctccaagcaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 gtctcatatctggccatgttataataatttagaaaattacttctgagtatctccgagcaa 680

                                                                       
Query: 481 ttcagtctaaaataccagtaaaatattcctgacatttccacattctagggatccccaaga 540
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcagtctaaaataccagtaaaatgttcctgacatttccacattctagggatccccaaga 740

                                                                       
Query: 541 acaagagtaaaggaaatctatcccaaacttctccttagggttaacctgccctcatcaatg 600
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcaagagtaaaggaaatctatcccaaacttctccttagggttaacctgccctcatcaatg 800

                                          
Query: 601 gtgatcagaattagtagtgcctccaagatac 631
           |||||||||||||||||||||||||||||||
Sbjct: 801 gtgatcagaattagtagtgcctccaagatac 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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