TTTTNTTTTTTTTTTCNNNNCCNCCCCCTNNNCNNTNTNNNNCCCTTCCC
CTTTACCCTTTTTTTTTTTTTTTTNNTATTTCCCTTATACCTTATTTTAT
CTNCCTTCNTCCCATATCCTTCCCATTCCCTATTTTATCCCCTTTCTATC
CCCCCACCCCTCATTTTTTTTTCCTATACATAATACATAATATATTTCTA
TCACCGTCTTTTATAATCCATTCACCTTTCTCCTATTTCCCTTTATTTNC
CTCTTCTATTCCCTTTTCTCCCTCTTTCCTTCCTCTCCTCTCTTCTCTTC
CCTCTCCTCCTNCTTCTCTTCTACCCCTCGTTCTCCCGCCAGGGAGCGCG
CGCCGGTGTGTTCGGAGAGAACAGCCGCGAATGAGGCGAGGACGGACGAG
AGGAGGACGCCCATCGAGGCGCGCGCGCGGTCCGGCTCGCGTTAGNCCGC
GCCCATTGTAACGCGTGTTGAAATCGCTGTGTCCCCCTTGTCTCCGCNGA
TGTTGTATTGTGCCGCTATGGGCGCGCTAGTCGTCGTGCACTTACGACGG
GTAGCGCCCTGATCCTGGCCGCGCGGGTGGTGGCCGCGCCGCACGAGAGC
GCGTACTNCGTGCGGTGTGGCGGAGCGAGGCGGCGCGGGCGCGGTTGTTC
CGCCCCTATGCGTCGCGGCGATATCACGTTGGTGTGTTCGATCGGCGTGG
ACGCGCGAGGACAGCTTCACCAGTTGTGTGCGACAGGAAGAGAGAGGGCG
ACATAGGAGCGCATAACATATCGACAGCATGGTGTAATGAAGCGATGTCT
ATTCGACCAGCTGGTTTGGTGTGGCTGTGGTGTNGGAGCGTGGTTGTGAT
GACACAGGATTGAACCACCGAAGAGGTATAAACCGGAGAATGATGTAATG
CTGACGGGCGAGCGATGCTCGTGACGGATGTGTGCCTGTATGGTGTCGTG
AATTCCCTATGTATATGGAATGCGATAGAGAACGGCCGCGAAGCGGCGCG
CAGTCGGAGGTGCATGCATCGTTATGGCGAGCGAGCGGGGTGGGGCTGGT
GTGCGTGTGCCGCGCCGCGAGANAATGTGTGTGTC

CTCAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAATAAGAGCTTTGCTTTCGAATC
TTTCAATGTTGTAATATTGAAAATATTATTGAAAGTGAAAAATTGAGGTT
GTATGCTATACTTTTAACTATAGTCAATAGCAGTCTCTTGAATAAATTAA
ATAAGGCAAAGTTACAGAGGTGTTAATTCTGTTCACAAGGCTACAGAGTT
TTATCACTTAGAGGATACTATGTGGACACTTTTTCCCACTTACATATTCT
GAAATATTAATAAAGGTCAAAAATTTTGATGATGTTGAAAGGAAGACTAA
TGCAAATTAAGTAGCAATATTATTTGACAAGAAAGTTCATGCAACAACTA
ATGTTAAAGAATTGAGGATGTTTTTGTTGTCCTATATTTTTTAGAACTTC
TCACATAACACAATGAGATATGATATTTAACTCCCATTTTCCACTCTAGA
TAATCCATATCACTCTCAATATATACAACCCATTTGAAGATATATTTATA
AGTAAATACATATAATTATATATATATAAATAATATATAAATATATTATT
GTATAAATAATATATTTTCATATTTATATTGTATAAATATCAATTATGAC
ATATCAATATATACATATGTAAATACCAACACACACCCCTTATATACTAC
A

Query= MSMg01no104_f03.g1 MSMg01no104_f03.g1 CHROMAT_FILE:
MSMg01no104_f03.g1 PHD_FILE: MSMg01no104_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:33 2005
         (545 letters)



>mm_chr1_113447929_113448876
          Length = 948

 Score =  955 bits (494), Expect = 0.0
 Identities = 533/548 (97%), Gaps = 5/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaataagagctttgctttcgaatctttcaatgttgtaatattgaaaatattattgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaataagagctttgctttcgaatctttcaatgttgtaatattgaaaatattattgaaa 260

                                                                       
Query: 61  gtgaaaaattgaggttgtatgctatacttttaactatagtcaatagcagtctcttgaata 120
           |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct: 261 gtgaaaaattgaggttgtatgctacacttttaactatggtcaataccagtctcttgaata 320

                                                                       
Query: 121 aattaaataaggcaaagttacagaggtgttaattctgttcacaaggctacagagttttat 180
            ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 321 cattaaataaggcaaagttacagaggtgttaataatgttcacaaggctacagagttttat 380

                                                                       
Query: 181 cacttagaggatactatgtggacactttttcccacttacatattctgaaatattaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacttagaggatactatgtggacactttttcccacttacatattctgaaatattaataaa 440

                                                                       
Query: 241 ggtcaaaaattttgatgatgttgaaaggaagactaatgcaaattaagtagcaatattatt 300
           ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcaaatattttgatgacgttgaaaggaagactaatgcaaattaagtagcaatattatt 500

                                                                       
Query: 301 tgacaagaaagttcatgcaacaactaatgttaaagaattgaggatgtttttgttgtccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacaagaaagttcatgcaacaactaatgttaaagaattgaggatgtttttgttgtccta 560

                                                                       
Query: 361 tattttttagaacttctcacataacacaatgagatatgata---tttaactcccattttc 417
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 561 tattttttagaacttctcacataacacaatgagatatgataatatttaactcccattttc 620

                                                                       
Query: 418 cactctagataatccatatcactctcaatatatacaacccatttgaagatatatttataa 477
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactctagataacccatatcactctcaatatatacaacccatttgaagatatatttataa 680

                                                                       
Query: 478 gtaaatacatataattatatatatataaataatatataaatatattattgtataaataat 537
           ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 681 gtaaatatatataattatatatata--aataatatataaatatattattgtataaataat 738

                   
Query: 538 atattttc 545
           ||||||||
Sbjct: 739 atattttc 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 948
Length adjustment: 10
Effective length of query: 535
Effective length of database: 938
Effective search space:   501830
Effective search space used:   501830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)