BAC Information

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BAC

Clone NameMSMg01-104F22
Chromosome1 (Build37)
Map Location 120,851,854 - 120,852,097
singlet/doubletsinglet
Overlap geneGli2
Upstream geneEG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753
Downstream geneLOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104F22.T7 (MSMg01no104_f22.b1)MSMg01-104F22.TJ (MSMg01no104_f22.g1)
ACCAG318999AG319000
length711701
length of high quality
(start - end)
---244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no104_f22.b1 PHD_FILE: MSMg01no104_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:36 2005CHROMAT_FILE: MSMg01no104_f22.g1 PHD_FILE: MSMg01no104_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAAACCTGGGCCGCGAANAACTTTTTCCTATCGAANNGGAGGNGGGGT
TCCNGACCGNAAGGAGGAGGGGAGGGANNNNNNGGGGGGGGGNNTTTTAC
CCANAAAAAAGGGGGAGNNNAAANGGNGGNANNANGNAGNNAGGAGGGGG
AAAGAAAGAAAGAAAAAAAAGAAAAANGAAAAAAGAGAAAAAAGAGAAAA
AAANGAGAGAGNAGGGAAGATTTTTTTTAAAAGGAAAAAAAGAAAAAAAA
AAAAAAAAGAAAAAAAAAAAAAGAGAAGGGAAAGTTTTTAATCCTTTTAA
GAGAAAGNAGAAANGGGGGAAGAAGAGATTTTTCCCCCCCCCACCCCCCA
AAAAAANTATATAAAGCATGATTTTAAAATATCCACCCGCCAAAAAAAAA
TCACACACCCGACGACTTCCCCGCCCCAATAACACCTCACCAGCATTCAT
ACCCCAAGCCATACCCCAGCATGAACCTCCAGCGACTATAAACGTACAAA
GAAACCCAACAATGTTCAAACAACCATGCCTCCATCACTACGATATACAC
ACCAACACATGATCTAAAACTACCCTAGCTAAACCCAACACCCACAAACA
GAACCCTCCCCCCACGTAACTTAACAGTCGTAACACCACCACGGACTTTT
TTTTTTTTTTTTTTCCCACGCACCACCGCTTCCCCGATTCCGCCACGTCC
CCGACGTTTCG
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAGGGCTTGCCAGGCTCAGGAACTGC
CAAGGCTCTGCCTCCCTCCTCTTACTGGATGCTGGGAGGGTACTCTGCCT
CCTCCAGCTCTGGGCCCACCACCCTCTCCTTGGGTAGCCAGTGACCCATC
TCTTCTTCCCAGTTCCCTGAATGGTCAGCTCTGCATATCTTCCTCAGAGC
TGATCCCGGAGTTTGTATTCCTGTGTGTCCCTTCCTCCACAGACAAATTA
AAAATGACATTTTACAGTTTAAGGAGATAGCTCAGTGGGTATAGTGCTTG
CTTTTCAAGAAGGAGGACCCGAGTCTGAGCCCCAGAAACCACATGGCGAA
GCAGGTACAATACTGTGGGGCTTAAACTCCCAAGAGCTGAGGGCTGTAGA
CAGGCAGCCCCTGTAACTCAATGGTAAAAGCCTAGGTGAGCATCATGTCA
GCAAGAGATGCTCCCTGTATAAAGAGTGACAATGCCCAAGGAATGGCACA
AAAGTTGTCCTCTGGTCTCCATGCCCAAGTGCACACATGTGCTTGTCCCC
CTCCCATACATACCCACACTCACTCCACTTTTTCCCTTATCCCCTATCTC
CCCCATCTCCCCCTCCTACCCATGCTCTTAAACTTTGAATTCACCCCCTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_f22.g1 MSMg01no104_f22.g1 CHROMAT_FILE:
MSMg01no104_f22.g1 PHD_FILE: MSMg01no104_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:37 2005
         (244 letters)



>mm_chr1_120851654_120852297
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagggcttgccaggctcaggaactgccaaggctctgcctccctcctcttactggatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagggcttgccaggctcaggaactgccaaggctctgcctccctcctcttactggatgct 260

                                                                       
Query: 61  gggagggtactctgcctcctccagctctgggcccaccaccctctccttgggtagccagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagggtactctgcctcctccagctctgggcccaccaccctctccttgggtagccagtg 320

                                                                       
Query: 121 acccatctcttcttcccagttccctgaatggtcagctctgcatatcttcctcagagctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccatctcttcttcccagttccctgaatggtcagctctgcatatcttcctcagagctga 380

                                                                       
Query: 181 tcccggagtttgtattcctgtgtgtcccttcctccacagacaaattaaaaatgacatttt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tcccggagtttgtattcctgtgtgtcccttcctccacagacacattaaaaatgacatttt 440

               
Query: 241 acag 244
           ||||
Sbjct: 441 acag 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)