BAC Information

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BAC

Clone NameMSMg01-105A02
Chromosome1 (Build37)
Map Location 27,658,555 - 27,658,817
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik, LOC677427
Downstream geneLOC100040952, EG433281, EG665903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105A02.T7 (MSMg01no105_a02.b1)MSMg01-105A02.TJ (MSMg01no105_a02.g1)
ACCAG319473AG319474
length698697
length of high quality
(start - end)
488 (48 - 535)267 (80 - 346)
definitionCHROMAT_FILE: MSMg01no105_a02.b1 PHD_FILE: MSMg01no105_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:29 2005CHROMAT_FILE: MSMg01no105_a02.g1 PHD_FILE: MSMg01no105_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCATTCCTGAGCCCCATTTTTTAATGGGGTTATTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACACGATAACAACCAGTTTTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCCCTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGGTGTGTGGGTTCTTTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTTCCATGCTAGTTTTTATCACAAT
TGCTCTGTACTAATACCTTTAGTCTGGCTTGGCCGATTTCTCCTGAAT
TCCTTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTCGTGCTGTCTTTGATT
TTCAATAAACTGGTTGTAATGTATTTCCTAGATGCTTTGAAAAGTTATAA
ATTAAATTATGGTTAGATGTATACTTCTGCTTTTTTTTTCCAGAAAAAAA
AATGTTTTTTGGAAGCCCATGATCTGTTTATATGTGATAATTTTGAAGTT
AACCAAAAAAAAAAAAACAAAACAAAACAACAAAAAAAAAACAATAACAA
TAACAAATCTATTGAAAATCAAATAGGCTATCACAACACTACTTTGCATA
GAAAAGCAATGCTATAGTCTCCATGAGTACTGAGTTATTCTGATTATTTC
TCTTTCAACATGACATATTTAATCACTGCTATACTTAGGGATAATCAAAT
CATATATTTCTTATAATATGTCAATCATAACTCACCTTTTACATGTATGG
AAGGATGTACCATCCCAAGACTGCCCCATTCAGGGATTCATCCCTTAACC
AGCCACCAAATCCCAAAATTATCTGTATTTCCCTCCAAATATTTTGCTGA
ACGGTCCCTATTATACCCTCTCTTTTGTGAAGCCTTTCCACGTGCCCGCC
AAAAACCTATGTTGGAAGTTCACAATTCTTCTCATTAACGGACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_a02.g1 MSMg01no105_a02.g1 CHROMAT_FILE:
MSMg01no105_a02.g1 PHD_FILE: MSMg01no105_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:29 2005
         (267 letters)



>mm_chr1_27658445_27659113
          Length = 669

 Score =  449 bits (232), Expect = e-130
 Identities = 257/270 (95%), Gaps = 10/270 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcgtgctgtctttgattttcaataaactggttgtaatgtatttcctagatgctttg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 attctcgtgctgtctttgattttcaataaactggttgtaatgtagttcctagatgctttg 314

                                                                       
Query: 61  aaaagttataaattaaattatggttagatgtatacttctgcttttt--ttttccagaaaa 118
           ||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||
Sbjct: 313 aaaagttataaattaaattatggttagatgtgtacttctggtttttatttttccagaaaa 254

                                                                       
Query: 119 aaaaatgttttttggaagcccatgatctgtttatatgtgataattttgaagttaaccaaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaaaatgttttttggaagcccatgatctgtttatatgtgataattttgaagttaaccaaa 194

                                                                       
Query: 179 aaaaaaaaaa-caaaacaaaacaacaaaaaaaaaacaataacaataacaaatctattgaa 237
           |||||||||| |||||||||||||       |||||||||||||||||||||||||||||
Sbjct: 193 aaaaaaaaaaacaaaacaaaacaa-------aaaacaataacaataacaaatctattgaa 141

                                         
Query: 238 aatcaaataggctatcacaacactactttg 267
           ||||||||||||||||||||||||||||||
Sbjct: 140 aatcaaataggctatcacaacactactttg 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 669
Length adjustment: 9
Effective length of query: 258
Effective length of database: 660
Effective search space:   170280
Effective search space used:   170280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)