BAC Information

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BAC

Clone NameMSMg01-105A12
Chromosome1 (Build37)
Map Location 105,238,165 - 105,238,458
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105A12.T7 (MSMg01no105_a12.b1)MSMg01-105A12.TJ (MSMg01no105_a12.g1)
ACCAG319493AG319494
length748688
length of high quality
(start - end)
294 (71 - 364)330 (75 - 404)
definitionCHROMAT_FILE: MSMg01no105_a12.b1 PHD_FILE: MSMg01no105_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:31 2005CHROMAT_FILE: MSMg01no105_a12.g1 PHD_FILE: MSMg01no105_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATGCG
CGGAATTCTCTGAGTCTCATTATATGTTGATATGTGTATTGGTCTTGTTA
TGTTTCAAAGACAATGTTTTCTTGGAATCAAACAAGACCTCTGTCTCTTA
CATTCCTTCTGTTTACCAGGGATACTGGTTTTAAGAGCAAGCAATCCCCC
GGAGCTCATGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCGGCC
ATCATTGGAAAGAGAGGCCCATTGGTCTTGCAAACTTTATTTGTCTCAGT
ACAGGGCAACACCAGGGCCATGAAGTGGGAGTAGGTGGGTAGAGGAGTTG
AGGGGAGGGTATGGCGCCCCTCCCTCTTCTTCATTTCTTTTTTTTCTCTC
ATACCTCTTATTCTACTTTCACCCTATTTTTTCTTTCTTTTATTTATTCA
CTAATTATTCCTTTTTTTTTTTTACTCATACCTCTATAACTCATATCTAA
CTCCTCTCTTTAACTCAATCCCATCATCCATTATCATTTACTGTATCTAC
ATTTTATATTATTTATCTTAAATCATTTTTCTTCTCATTTTTTTCATTCT
ATCTCTTTATCTCTCTATCCATACATTTATTTTATTTTATTCCTTCTTTT
TTCTACATCTCTCTCTCACTCCACTTCATCCCATAACTCTCCTATTTTCC
TTTCTTATCCCTATCTTACCTCTCTCTCTCTCCTATTATCCCTCTCTC
CACGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTTTGAGACCCATTTTT
AAAGGGGGTTGTTTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATAT
ATATTGGATATTAGTCCTCTCTCTGATTTAAGATAGGTAAAGATCCTTTC
CCAATTTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCATTTGCCTTGC
AGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCAATCCTCAATCTTACA
GCACAAGCCATTGTTTTGTACTTCAGTCTCTAAGGAAAGCTTACAGGAAT
TAAAACTGACCTTCGCTTGTATGGAGAAGAAATTTCACTTCTTATAAATG
GAACATAAAGTACACCTACATACAGATTAATTTCTAATCCTAGAGATGCT
CAGGAGTTAATAGCACTTGCTGATCAGGTAGGGGGCATGAATTTGGCTCC
TATTATCCATGCAGGACATCTGTAACTACTACACTCAGGATCCAATCACC
TTTTCCAGTCATTGCAGGTACCTATACTTAAATGTGAATGCTCGCTCATA
TATTTGCATACGTGCTAACTCTTAAGATTTGATGAATTCCTGGAAAGCTT
CTTTTCCTTTGAACTTTCTGAAATTATAACTTTTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_a12.b1 MSMg01no105_a12.b1 CHROMAT_FILE:
MSMg01no105_a12.b1 PHD_FILE: MSMg01no105_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:31 2005
         (294 letters)



>mm_chr1_105238141_105238834
          Length = 694

 Score =  538 bits (278), Expect = e-157
 Identities = 290/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatgttgatatgtgtattggtcttgttatgtttcaaagacaatgttttcttggaatca 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 318 tatatgttgatatgtgtattggtcttgttatgtttcaaagacaacgttttcttggaatca 259

                                                                       
Query: 61  aacaagacctctgtctcttacattccttctgtttaccagggatactggttttaagagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aacaagacctctgtctcttacattccttctgtttaccagggatactggttttaagagcaa 199

                                                                       
Query: 121 gcaatcccccggagctcatgtctctagctgcatatgtagcagaagatggcctagtcggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gcaatcccccggagctcatgtctctagctgcatatgtagcagaagatggcctagtcggcc 139

                                                                       
Query: 181 atcattggaaagagaggcccattggtcttgcaaactttatttgtctcagtacagggcaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 atcattggaaagagaggcccattggtcttgcaaactttatttgtctcagtacagggcaac 79

                                                                 
Query: 241 accagggccatgaagtgggagtaggtgggtagaggagttgaggggagggtatgg 294
           |||||||||||||||||||||||||| ||||||||||||| |||||| ||||||
Sbjct: 78  accagggccatgaagtgggagtaggttggtagaggagttggggggagagtatgg 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)