Query= MSMg01no105_a18.b1 MSMg01no105_a18.b1 CHROMAT_FILE:
MSMg01no105_a18.b1 PHD_FILE: MSMg01no105_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:32 2005
(529 letters)
>mm_chr1_72536460_72537387
Length = 928
Score = 971 bits (502), Expect = 0.0
Identities = 521/530 (98%), Gaps = 6/530 (1%)
Strand = Plus / Minus
Query: 5 gaattctcttgttct-----cctcccccccccaagttttgtgatcttgtgttctcgttcc 59
||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 852 gaattctcttgttcttctccccccccccccccaagttttgtgatcttgtgttctcgttcc 793
Query: 60 cttttcctctccttctccctcctcctccccctcccccctctctcccttcccttgccccct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cttttcctctccttctccctcctcctccccctcccccctctctcccttcccttgccccct 733
Query: 120 ccctgggtgtaggatgggtggaaggtggggcttctgtcattataagaaattgggcaggct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ccctgggtgtaggatgggtggaaggtggggcttctgtcattataagaaattgggcaggct 673
Query: 180 agcacccaccacaggaagcacaattaagaatgatcacagtaggaaggctgctctccagga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agcacccaccacaggaagcacaattaagaatgatcacagtaggaaggctgctctccagga 613
Query: 240 agcacggagagctgtcaggacaagtgacctttctaatcacgcctgacatttcacagcctt 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 612 agcacggagagctgtcaggacaagtgacctttctaatcacgcctgacatttcgcagcctt 553
Query: 300 gaaggcggaagagctgcccttattctggaggcgagatgtcgctctttgtcaccccagaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaaggcggaagagctgcccttattctggaggcgagatgtcgctctttgtcaccccagaca 493
Query: 360 cctgcatctgaggctgtggtgacttggcccccagccactcagtgaagcagagcgtgcaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cctgcatctgaggctgtggtgacttggcccccagccactcagtgaagcagagcgtgcaga 433
Query: 420 gggctttgtttctctagggaaagagaacacactgagcccaaagcttaggtgtttggcaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gggctttgtttctctagggaaagagaacacactgagcccaaagcttaggtgtttggcaac 373
Query: 480 tgagtctaaaccgggaaacagagaggtataggagaagcatatcccctcct 529
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 372 tgagtctaaaccggg-gacagagaggtataggagaagcatatcccctcct 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space: 476442
Effective search space used: 476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_a18.g1 MSMg01no105_a18.g1 CHROMAT_FILE:
MSMg01no105_a18.g1 PHD_FILE: MSMg01no105_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:32 2005
(457 letters)
>mm_chr1_72462214_72463074
Length = 861
Score = 281 bits (145), Expect = 9e-80
Identities = 154/159 (96%), Gaps = 4/159 (2%)
Strand = Plus / Plus
Query: 303 ccacgccttatcttttacaaagggtttagaggacggaatgtggcttactgggtttgtgag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccacgccttatcttttacaaagggtttagaggacggaatgtggcttactgggtttgtgag 562
Query: 363 acaaccatctttacttgctgagccatctccctggcccactctgtactataattctctgtc 422
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 563 acaaccatctttacttgctgagccatctccctggcccactttgtactataattctctgtc 622
Query: 423 tctg----tcttcatctctcagattgcaggttccaggaa 457
|||| |||||||||||||||||||||||||||||||
Sbjct: 623 tctgactgtcttcatctctcagattgcaggttccaggaa 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 861
Length adjustment: 10
Effective length of query: 447
Effective length of database: 851
Effective search space: 380397
Effective search space used: 380397
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
