BAC Information

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BAC

Clone NameMSMg01-105G04
Chromosome1 (Build37)
Map Location 97,457,000 - 97,457,392
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040685, LOC383603, Tmem157, LOC100041686
Downstream geneRnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105G04.T7 (MSMg01no105_g04.b1)MSMg01-105G04.TJ (MSMg01no105_g04.g1)
ACCAG319754AG319755
length715704
length of high quality
(start - end)
395 (43 - 437)339 (75 - 413)
definitionCHROMAT_FILE: MSMg01no105_g04.b1 PHD_FILE: MSMg01no105_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:00 2005CHROMAT_FILE: MSMg01no105_g04.g1 PHD_FILE: MSMg01no105_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATT
CACTAAAATCAACACTGTCCTTGAAATATTTTTCATTGCCTCCTAGAATA
TTCTACAAATGTTTTTTTTGAGCCGGATAATATACAGTTCATGATCACAA
CATTTATTTTTGTGTAAAAATAATAGACAGATCAATCTCTAAACTATTCC
TAATTTTTAATAGGATAAGAGAACTTTCAAGAGCTGCAAGGCTAATCAGG
CCCATGTTTAGCTTTTCCTGCAAGTTTTTCTGTGTGTATATGGCATGTTC
CAGGAGCACAAACATTCAATGTTGAATGTCTGCAGTACTTTAAAAAGAAG
TAAATCAGAGAATCAGTACAGGACATTTAACTGTCATAGTGAAGATAGGT
GAGGTAACTGCTCACACTAGTCCTTACTAAAAGATATTCCAAGGACCATA
ATATTGACAGTAGTGGGCATGGCATGAATCCACAATCTCGAAGAGAGGGA
ATGGGATATGGGAATTTCAGAACTATACTTTTTTTTTTTTTTGCCTGATA
ATTGAGCCCTTTTTCTATATGACTGTCCTGGTGACACAGGAGCAAAAATT
GCCTACGCGGATGGGAGTCATTGGGACAGCAAGTCCCGTTTATTTTCCGC
CCGCATCAGGACATTTCCCTCCCAAAAGGAGCCGTATTCTTCCTAGTTCC
CTCTCCTTTCCGCTA
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGGAACAGAG
TACCAGTGAGTACAGCTTTACGAGGTAAGTCTGGTCTTGAACTTTCTAAG
GAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATAGCTTTACAAGG
TACGCCTGGCCTTGAACTTTCTAAGGAAATTCAGGACAGTCTATCAGAAG
TAAAGTGGAAAATAGCTTTACAAGGTACGCCTGGCCTTGAACTTTCTAAG
GAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATGGCTTTGCAAGG
TATGTTTGGCCTTGAATTTTTTCTAGTGTTAGGAGCCCTTTTGTTCCTTT
TCACATGTTATCAGGCGACTAAGATAGGGCTGAAAATTCTGGATGAAATT
CAGGGCAATCTTATTAGAACTATAGTGGTTAGAGAGAGTATGAGCACAGA
TACCATATGTTACACAAAATAAGTATACAGGTCTTTCCAAGGGTCTTTAA
ACCCGAGCAAAAGTTTAGGTCAGGCAATAATACCTGGCGAAAGATTATAA
CGAAGGGACAAGGAAATAGACACACATTTCCGATACCTTTCAGGAGCCAG
CTCCTAACCATTTCTGAAACCAAATGAAATACGTTATTAACTGTCTGGAA
CGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_g04.b1 MSMg01no105_g04.b1 CHROMAT_FILE:
MSMg01no105_g04.b1 PHD_FILE: MSMg01no105_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:00 2005
         (395 letters)



>mm_chr1_97456797_97457592
          Length = 796

 Score =  696 bits (360), Expect = 0.0
 Identities = 385/394 (97%), Gaps = 3/394 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcactaaaatcaacactgtccttgaaatatttttcattgcctcctagaatattcta 63
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 596 gaattcactaaaatcaacactgtccttgaaatatttttcattccctcctagaatattcta 537

                                                                       
Query: 64  caaatgttttttttgagccggataatatacagttcatgatcac--aacatttatttttgt 121
           |||||| |||||||||||| |||||||||||||||||||||||  |||||||||||||||
Sbjct: 536 caaatg-tttttttgagcctgataatatacagttcatgatcacaaaacatttatttttgt 478

                                                                       
Query: 122 gtaaaaataatagacagatcaatctctaaactattcctaatttttaataggataagagaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtaaaaataatagacagatcaatctctaaactattcctaatttttaataggataagagaa 418

                                                                       
Query: 182 ctttcaagagctgcaaggctaatcaggcccatgtttagcttttcctgcaagtttttctgt 241
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 417 ttttcaagagctgcaaggctaatcaggcccatgtgtagcttttcctgcaagtttttctgt 358

                                                                       
Query: 242 gtgtatatggcatgttccaggagcacaaacattcaatgttgaatgtctgcagtactttaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 357 gtgtatatggcatgttccaggagcacaaacattcaatgttgaatgtctgtagtactttaa 298

                                                                       
Query: 302 aaagaagtaaatcagagaatcagtacaggacatttaactgtcatagtgaagataggtgag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 297 aaagaagtaaatcagagaatcagtacaggacatttaactgtcatagtgaagctaggtgag 238

                                             
Query: 362 gtaactgctcacactagtccttactaaaagatat 395
           ||||||||||||||||||||||||||||||||||
Sbjct: 237 gtaactgctcacactagtccttactaaaagatat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 796
Length adjustment: 9
Effective length of query: 386
Effective length of database: 787
Effective search space:   303782
Effective search space used:   303782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)