BAC Information

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BAC

Clone NameMSMg01-105J01
Chromosome1 (Build37)
Map Location 75,645,854 - 75,645,978
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105J01.T7 (MSMg01no105_j01.b1)MSMg01-105J01.TJ (MSMg01no105_j01.g1)
ACCAG319884AG319885
length721714
length of high quality
(start - end)
125 (78 - 202)44 (76 - 119)
definitionCHROMAT_FILE: MSMg01no105_j01.b1 PHD_FILE: MSMg01no105_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:14 2005CHROMAT_FILE: MSMg01no105_j01.g1 PHD_FILE: MSMg01no105_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTCTGTCGTTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCCGCGGAATTCACAAGATATTCGACTGCCTCTGAGTCTCAAGTGCTGG
GATTAAAATGTCCAACCCCCATCCTCTGTGTGTGTGTGTTAACACAGGAT
TTGTGGTGTGTGCTTATGTGTGTGGTAGATACATACATGTATGTGTTCAT
GAGGGTGGTAGATATGTGTGAGCATGTATAAATATAGAAGTCAACAGCTC
TCTTCCTCGACTGCTCTCCACTGTACTATTTGAGGCATGGTTTCTCATTG
AACTTGTAGCTTGCTAATTCAGCTAGACTGGTTGGCTAGTGAGTGCCGAT
GAGCTGCTCGCTCTGCCTTTGTCACTGTCAGCTGCTCCGCGTGACAAATA
CATGTCTGCGGCCGTGCCCACATTGCTTATGTATCATATCGCAAGTTCTC
GTGCATGGCAAGTTCTTTACCCACCACTCCTGCTTGTTCGCTTCACGCCT
TTTCCCTTCTTACTTTGACTGAGTTCCCTACATCTTCTAATGTTCCTTCT
GTATTCCTGATATACGCCTAGACTGTCCCCTCACTCCCCGTCCGTTTTTC
CTTTCCCCCTTTATACCGCCACCCTATCACCCTGTGCTCTACCTTTAACG
ACCCTAATTTGCATCCTGACCTAACTCTATCCCCTTCCCGCCTTTCCTCA
CCCTATCCTTCCTACAATCCC
NTTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGA
AACCCTGTCTTGAAAAACCAATAAAAAAAAAAAAAAAAAAAAAAAAACAA
GAGTTACTAGTGGTCATGGTGTCTCTTCACAGCAATAGAAAGTTGAACTA
AGACAGGTCAGGTACCAGCCAGCAGCTTTTCTATTTAGTAATGTACTCCA
AGATGCTCAATCTTAGATGAGTTTATGCCTCCCTCATGAAAAGGCTATTT
TCAGTCACTGCCCCCCATCTTGACCCCTTAATATGCGGCATCCTCTTATT
TCCTGGGTGATTTTCTTCCCTGCCAGCGTTACAAAGATACCATGGCCAAT
TAGTAAATTTTCAAGTGCGTTACACGACGAATAACACATATGAGCCACCC
CGCAGCCTGTGCGTCTATATTGCACATTTTGCAGATATGGTGCAACTTCA
TACTACCCCTTTATTTGAACAAACGTGGTTGCCCATACTTCACCTTGGCG
ATAATTTGCTTTTTCACACAAAAACACTTTACCACATTTACCCTTTTTCT
ATTCCACGTTTCTCCGATACCCCCACTAACGAAACCAGCCCCTCTTCCTC
CCCCCCGCCCTACACTTCCCTATCGGACATCCCGCTATGGCTTTTTCCCC
CTCGCCAATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_j01.b1 MSMg01no105_j01.b1 CHROMAT_FILE:
MSMg01no105_j01.b1 PHD_FILE: MSMg01no105_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:14 2005
         (125 letters)



>mm_chr1_75645654_75646178
          Length = 525

 Score =  203 bits (105), Expect = 3e-57
 Identities = 120/125 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctctgagtctcaagtgctgggattaaaatgtccaacccccatcctctgtgtgtgtgt 60
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 201 tgcctctgagtctcaagtgctgggattaaaatgtccaacccctaccctctgtgtgtgtgt 260

                                                                       
Query: 61  gttaacacaggatttgtggtgtgtgcttatgtgtgtggtagatacatacatgtatgtgtt 120
           |||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 261 gttaacacagtatttgtggtgtgtgcttatgtgggtggtagatacatatatgtatgtgtt 320

                
Query: 121 catga 125
           |||||
Sbjct: 321 catga 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 525
Length adjustment: 8
Effective length of query: 117
Effective length of database: 517
Effective search space:    60489
Effective search space used:    60489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)