Query= MSMg01no107_b09.b1 MSMg01no107_b09.b1 CHROMAT_FILE:
MSMg01no107_b09.b1 PHD_FILE: MSMg01no107_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:27 2005
(695 letters)
>mm_chr1_69936185_69937281
Length = 1097
Score = 1257 bits (650), Expect = 0.0
Identities = 686/704 (97%), Gaps = 14/704 (1%)
Strand = Plus / Minus
Query: 1 aactatgatttcaagttaaggcctttaaaaca--ccctgaacaagcaatattaatttgta 58
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 891 aactatgatttcaagttaaggcctttaaaacaag---tgaacaagcaatattaatttgta 835
Query: 59 gaaatttgatttgttgttccttctcatgctaaactcgccaactctcctttatatagatac 118
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 834 gaaatttgatttgttgttccttctcatgctaaactcaccaactctcctttatatagatac 775
Query: 119 acatttaaccaatgttaactgaacatgctcaggtcctgggataagtttgcaaactcttct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 acatttaaccaatgttaactgaacatgctcaggtcctgggataagtttgcaaactcttct 715
Query: 179 ctctaacttaaactattaacacctaacattgcgaatctccaagtccactacagagcaaac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctctaacttaaactattaacacctaacattgcgaatctccaagtccactacagagcaaac 655
Query: 239 acaagtgcaagaacaaattacttatctgaaaagtgctactgaagttatttattccagatg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 acaagtgcaagaacaaattacttatctgaaaagtgctactgaagttatttattccagatg 595
Query: 299 gatgattaaaaaatatttaagatacaaagacaccctcaagcaaaattgcagaggccaatc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gatgattaaaaaatatttaagatacaaagacaccctcaagcaaaattgcagaggccaatc 535
Query: 359 acacatgtaactgaaagtc-----aaaaaaaaaaaaaagcccacagtattctagaaacac 413
||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||
Sbjct: 534 acacatgtaactgaaagtcaaaaaaaaaaaaaaaaa--gcccacagtgttctagaaacac 477
Query: 414 tatttgaaaggtaatattacatctttcaaaaatagactatattgtctacctgccaatgta 473
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 476 tatttgaaaggtaatattacatctttcaaaaatagactatattgtcttcctgccaatgta 417
Query: 474 agaaatgagcattacatagaacaattctgagcagcaacaaaaataacatagaaaacactc 533
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agaaacgagcattacatagaacaattctgagcagcaacaaaaataacatagaaaacactc 357
Query: 534 attagtaaacctgcatgatgtaaggagtaccctgaactgttgagtgaggaatatgataag 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 attagtaaacctgcatgatgtaaggagtaccctgaactgttgagtgaggaatatgataag 297
Query: 594 gagtactgtgttctgttcatctgcagtactaaaccaggcagtactttgctctctacatga 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gagtactgtgttctgttcatctgcagtactaaaccaggcagtactttgctctctacatga 237
Query: 654 tacttatttcctctatggggttctaaaatcattttt--ccataa 695
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 236 tacttatttcctctatggggttctaaaatcattttttcccataa 193
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1097
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1087
Effective search space: 744595
Effective search space used: 744595
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_b09.g1 MSMg01no107_b09.g1 CHROMAT_FILE:
MSMg01no107_b09.g1 PHD_FILE: MSMg01no107_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:27 2005
(633 letters)
>mm_chr1_69810138_69811170
Length = 1033
Score = 1162 bits (601), Expect = 0.0
Identities = 625/633 (98%)
Strand = Plus / Plus
Query: 1 gaacacaagctgtcccttaatgcttcggggcaccctacgtgaagcacgcattgacatttc 60
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 201 gaacacaagctgtcccttaatgcttcagggcaagctacgtgaagcacgcattgacatttc 260
Query: 61 gtataatagtaggcagagtcttgcctattaaaacttcagaaaagcatgcccagaactgaa 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gtataatagtaggcagagtcttgcctattaaaacttcggaaaagcatgcccagaactgaa 320
Query: 121 aatttgtcagaggcagcccggtggggtagcaacagacggagaaaaatgttttgacatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttgtcagaggcagcccggtggggtagcaacagacggagaaaaatgttttgacatcag 380
Query: 181 ccatgtgagagcaagtggaagtgtctctgtgttgggttagtttcacacacaatatcaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatgtgagagcaagtggaagtgtctctgtgttgggttagtttcacacacaatatcaggc 440
Query: 241 agttgattttagtaactcttaggatcatactggcagattttagtgcagtgaattgaaatc 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttgattttagtgactcttaggatcatactggcagattttagtgcagtgaattgaaatc 500
Query: 301 aagaagcaattatgattactacaaccttaaggggacagtcacacgtttgtgcttgagtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaagcaattatgattactacaaccttaaggggacagtcacacgtttgtgcttgagtgt 560
Query: 361 tgagactatggaatgaaatctgaccctctagatatgagcaagtatgtttgagaatccttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tgagactatggaatgaaatctgaccctctagatatgagcaagtatgtttgagaatccatc 620
Query: 421 actgaaggaactcaaattcccctattgatgaatgctcagtgatactgcctacagtgtacc 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 actgaaggaactcaaattcccctattgatgaatgctcaatgatactgcctacagtgtacc 680
Query: 481 ttttcttttccctaaaggaacatttaacccagatccatcatggacatataactctgtaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttcttttccctaaaggaacatttaacccagatccatcatggacatataactctgtaag 740
Query: 541 ataatatgaattaattaattatgaaaaatgaaattgaaacattgcaatcactccaaatat 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 ataatatgaattaattaattatgaaaaatgaaatcgaaacattgcaatcactccaaatat 800
Query: 601 atttcacatccaaagctcctattacaaaatatg 633
|||||||||||||||||||||||||||||||||
Sbjct: 801 atttcacatccaaagctcctattacaaaatatg 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
