BAC Information

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BAC

Clone NameMSMg01-107N18
Chromosome1 (Build37)
Map Location 67,841,747 - 67,986,703
singlet/doubletdoublet
Overlap genenone
Upstream gene1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107N18.T7 (MSMg01no107_n18.b1)MSMg01-107N18.TJ (MSMg01no107_n18.g1)
ACCAG321470AG321471
length1,2861,263
length of high quality
(start - end)
276 (134 - 409)337 (120 - 456)
definitionCHROMAT_FILE: MSMg01no107_n18.b1 PHD_FILE: MSMg01no107_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:19 2005CHROMAT_FILE: MSMg01no107_n18.g1 PHD_FILE: MSMg01no107_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,986,428 - 67,986,703)(67,841,747 - 67,842,083)
sequence
NCCGATATTNTNNNNGAACACTGCGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATCAAATAGGAACCCTTTACAATTACTACTTTTT
TCCTATAAAATCTTCTGTTTCCCTAAAAGGCCTTGATGCACGAATGGGAG
CATGCTAAACATCACCGTGTATGAGTCAGGCAATCATATCTGCTTCAGGA
CCGTGTTCTCTTAGCTCAGAAAGGGTTGTGCACTTTAGGGACAATTAAAA
AGTATAAAGTACGGTAGTCGAAAGATCTAGGCAATGTCCAGGGCCTCATG
TATTTACTCTGCCCAAAAGTAAACCAGTCATAATTTATACATTTGCTGAG
AAGTAGAAAATACACAGACAGAGTTTGGAAGACCAGGAATCAACAGATGC
AATAAAACATTATTTTAAGATGCTCTAGTTTTGAGATGGATTTTTGTCCT
CTCGGGTCTTCTTTGCCTTTTGCCCCACCAAAATCGACTTCTCTAGTCCT
GCTACCTGAAACCTACTTTTTTTGTGGTTCTTACCCACTTCCAATTAAGG
AAAGCATGAAAGAAGCACTAGGTGCGGTTGAGTGGGACCATCATTTTGTA
ATTAGTTTGTAACCTAATTAGTTTTCTGACCAAAGGCAAGTGATCTGACT
TTCTTACCACACACTGCTCTGTCTTAAAGACTTAATTTGAGACTCTTACA
TAAGTCTTTATTTGACATTATTAATGCCTATTAGCCAATACAGTGTGACA
CCTAATAAATATGCCACTTTCTATAAGCTCTGACTTTTAAACCGTGATAG
TACCATCCATGATGGCCTGTCTATCTCCCATCCCTGCCTAGTTATGTGTA
TTATCCCACATATTTGTTTTTCCTTTTCCTATCCCCTCTTTACCACTTAC
AATGCCCGTTTTGTCCTGTGCTTCTGTCTATCTCAAACTCTGTTCTTGCA
GTGCATCTCTCCTGATTTTTTTTTCTCTTATTCCTAACGCTAAACTTTAT
CTTTCTACCCATTCCTTAACCGTTTCTTATTTTAATATTTTTAACTTTAG
TTTCTTTATCTCTTTCGTTCTTTTCTGCTAATTCTTTTCTCCTCTAATAT
TGTCCTATTATACCTTTTTATTAATTCTTTATCCACCGCTATTTCTCCCT
ATATTAATCTTTTCCTTTAACAAATTCTATCCTCTTTCTTTTGATATACC
TTTTCCTTTATAAATCGCACCTCTTAATCTTGTTCTCTATCTTTTATCTT
TATTCTTCTNTCATTTTCCCTCTTCAACAATATCAA
TTTTTCTACTGATTGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCTTAAGCTATCAATTATTTGGGTTGGAATT
TTCCTTTGCCCTTTAATGGCAGACATACCCCAGGGGTCATGTTCAATCAC
CCCAAGAACACTCCAGCTGGAGTTCATTGGCAAGATGACTAATAGACAAT
TAGGGCACAATGGAGGCCATTTATTTTCTAAACATGTCTCTAATTTGCCA
GTCATTCGAAGCTTTGGAGCAATAAACTCACTGTTTAGAGGGTGGTTTCT
GGTATCTGGGCTGAAGCATCTGAGTGTGCACACACACCCACGATAATGTT
TCAGACATCAAAAGCAGAGTATGGAGAGAACTAGGTATTTTTAAAAGACT
TATTTTTAAATGTACTAGAATAAAAATAGCTTCTCAATTCTTTTGAATGC
TGTTAAGACAGCCCCCTAACTGCATGTCATTATTTGTAAGGTTTTGGTTG
CCATTTCATTTCCTAAAAGCATATTCTATTTTTTTCTTTGTCGAGAATGT
TTTTAAATGTATTGAATAAGATGAAACTCCAATTTAAATGTGTATATATA
GTAAATCAAAGTTCCTACAAAAAAACGGGGGACCCCTTATCACATTCATG
AGAACAGAAAATTTCCACTGGAATTTGAAGAAACTAGTATTTTCATGGGG
TGTTATTATCTGAATTACAGCCCGAGTCCACAGATTTATTCATAATCTCT
CCCTGTAATTTTATTTATTGCCTTCTAAAGCTCAGTCATGAACCTTAACC
ATATCTTGATTCCTACTGAATTTGCATCTTAATTCATACCTATTCTTGGC
CTGAACTTTTTATGGGTTTCTGTCCCCTCCTTAAGAAATTATTGGCTTCG
AAATCATTGCCCTTTTCTTTTATTTTTTTCCCAATTGATTTGCCACCCCT
GGTCAAATTTTTTTCTATTTACTGAACCTTATTTCTTTGTTTATTGAATA
ATTCCTCTGGGTTTTTTGCCCGTTAATCAAACTATATTTTTGTATCTTTC
TATGTTTCTTAACCAAATTATATTTTGGTCCTTTTAATTGTATTGTCTTC
ACATAATATGTCCTTAAGTCTCTTTTTTATATTAATACCCGGGTCTCTAT
ATTCTTTCCCCCTCCAGTTAGGTATTCCTCTACTTCTACTACTTCTTTCT
CTATTTGTACATCTCGCTTAACACATTTCTTCCCTTCTATACACTTTTAT
ATATTTTTTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_n18.b1 MSMg01no107_n18.b1 CHROMAT_FILE:
MSMg01no107_n18.b1 PHD_FILE: MSMg01no107_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:19 2005
         (276 letters)



>mm_chr1_67986228_67986903
          Length = 676

 Score =  526 bits (272), Expect = e-154
 Identities = 275/276 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatgcacgaatgggagcatgctaaacatcaccgtgtatgagtcaggcaatcatatctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgatgcacgaatgggagcatgctaaacatcaccgtgtatgagtcaggcaatcatatctgc 417

                                                                       
Query: 61  ttcaggaccgtgttctcttagctcagaaagggttgtgcactttagggacaattaaaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttcaggaccgtgttctcttagctcagaaagggttgtgcactttagggacaattaaaaagt 357

                                                                       
Query: 121 ataaagtacggtagtcgaaagatctaggcaatgtccagggcctcatgtatttactctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ataaagtacggtagtcgaaagatctaggcaatgtccagggcctcatgtatttactctgcc 297

                                                                       
Query: 181 caaaagtaaaccagtcataatttatacatttgctgagaagtagaaaatacacagacagag 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 296 caaaagtaaaccagtcataatttagacatttgctgagaagtagaaaatacacagacagag 237

                                               
Query: 241 tttggaagaccaggaatcaacagatgcaataaaaca 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tttggaagaccaggaatcaacagatgcaataaaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no107_n18.g1 MSMg01no107_n18.g1 CHROMAT_FILE:
MSMg01no107_n18.g1 PHD_FILE: MSMg01no107_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:20 2005
         (337 letters)



>mm_chr1_67841547_67842283
          Length = 737

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacataccccaggggtcatgttcaatcaccccaagaacactccagctggagttcattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacataccccaggggtcatgttcaatcaccccaagaacactccagctggagttcattg 260

                                                                       
Query: 61  gcaagatgactaatagacaattagggcacaatggaggccatttattttctaaacatgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaagatgactaatagacaattagggcacaatggaggccatttattttctaaacatgtct 320

                                                                       
Query: 121 ctaatttgccagtcattcgaagctttggagcaataaactcactgtttagagggtggtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaatttgccagtcattcgaagctttggagcaataaactcactgtttagagggtggtttc 380

                                                                       
Query: 181 tggtatctgggctgaagcatctgagtgtgcacacacacccacgataatgtttcagacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtatctgggctgaagcatctgagtgtgcacacacacccacgataatgtttcagacatc 440

                                                                       
Query: 241 aaaagcagagtatggagagaactaggtatttttaaaagacttatttttaaatgtactaga 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 aaaagcagagtatggagagaactaggtatttttaaaagacttaattttaaatgtactaga 500

                                                
Query: 301 ataaaaatagcttctcaattcttttgaatgctgttaa 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaaaatagcttctcaattcttttgaatgctgttaa 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)