GACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCTCTTTATTCCTAAAAAAGAGGCAGTCATTGTGAAAGAGCAAGC
TTTAATCATTTTCAAATTGTTGGACAGTTTGATTTTGAATACACTGGTTT
TGGAAGGGAACTGACTTTGAAATGAAAGTATAAAATCCCTTCACATAGGA
GTCTTCAATTGTGTGCCTGAAAATATTTTGATTTCTTTGTGTAAGTGCTA
TGGCTTATCATTGCCTCTAACTATATGCTTACCACAGTGTTTGAAAATTG
AGCTGGCAATTTACATAGCATATCACAAGTGAGGCAAAGCAGGAGAATAT
TAAATGGTATGCAAATTGATTCATGAATATGGATAGTATTCCAAGTTACA
GATACTGTCATAACATCACAGAACTTAAAATGGGATTTTATTACAATGGC
TTGATTTCTGTAGAATAAAGTATAGCAAATATGACTGACGATCCTAATGT
CTAGGTTCCTCAACTTTGGCTTTGTGAGACACAAACCATATTTTTATTCA
GTAGTTTTAAATGATAAAATGAAGTGTGCAACACACAATAACAGAACTGT
GAGAGTTACAATTCAAATACTCATTTGGTATGAGCAATATTTCTTTATTC
CATTATATTTTCTATGTCCTATAAAGTACTGTGATGGATATGTG

NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCACTTGTCTTTTCTTTATTGC
TTCTATTTTCGTTTTCAGGTCTTGAATAATTTTATTCATTTTTTTCAACC
ATTTGCATTTTCTTGATTTTCTTTAAGGGATTCATTAATTTCTTCTAATT
GTTTGTGTTTCCCTGAATATAAAGAATTCATTCATTCATTTCATGTAAAG
GACCTTTAACATCTTCATAAAGTTGGTATTAATGTGATTTTCTTATGTTT
CACCTATGTTGGAATATTCAGAGTCTGCTGTATTGTGATAGCTGAGTTCT
AATGGAAACATATTGCTCTGGCTGTTATTAAATATGTTTTTATACTGGCT
ACTATTGACTGTTTTTACCCTGGAGGTTCCTGATTGTGTTCTTACAGTGT
TAACTAAACATCTGGATTTGGCCTTATTAGCGGTCTACGATCTGCGTTAA
GGTTTTGTTTTTTGTTGGGCAGGTGTTTTCTTCCTTGTTTCCTATCTTCA
TTTTCGGCGCATATGATGGTCGCATGTATCTCGTTTTTGACATGTTCATC
TTTTAAGCTCCCAGTGAACACATATTGCTATTTTCAGGTTAAATCACTGG
TTAGAATTTTTAGAACAATGTCAACATGATAAGGCCTCTTTTTTCCTCTT
TTTCGGACTTCCTCCTTTATT

Query= MSMg01no108_d18.b1 MSMg01no108_d18.b1 CHROMAT_FILE:
MSMg01no108_d18.b1 PHD_FILE: MSMg01no108_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:01 2005
         (648 letters)



>mm_chr1_26567820_26568868
          Length = 1049

 Score = 1199 bits (620), Expect = 0.0
 Identities = 638/644 (99%), Gaps = 1/644 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctcttt-attcctaaaaaagaggcagtcattgtgaaagagcaagctttaatcatt 64
           ||||||||||| ||   |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 849 gaattctctttaatgaataaaaaagaggcagtcattgtgaaggagcaagctttaatcatt 790

                                                                       
Query: 65  ttcaaattgttggacagtttgattttgaatacactggttttggaagggaactgactttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ttcaaattgttggacagtttgattttgaatacactggttttggaagggaactgactttga 730

                                                                       
Query: 125 aatgaaagtataaaatcccttcacataggagtcttcaattgtgtgcctgaaaatattttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aatgaaagtataaaatcccttcacataggagtcttcaattgtgtgcctgaaaatattttg 670

                                                                       
Query: 185 atttctttgtgtaagtgctatggcttatcattgcctctaactatatgcttaccacagtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atttctttgtgtaagtgctatggcttatcattgcctctaactatatgcttaccacagtgt 610

                                                                       
Query: 245 ttgaaaattgagctggcaatttacatagcatatcacaagtgaggcaaagcaggagaatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttgaaaattgagctggcaatttacatagcatatcacaagtgaggcaaagcaggagaatat 550

                                                                       
Query: 305 taaatggtatgcaaattgattcatgaatatggatagtattccaagttacagatactgtca 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 549 taaatggtatgcaaattgattcatgaatatgaatagtattccaagttacagatactgtca 490

                                                                       
Query: 365 taacatcacagaacttaaaatgggattttattacaatggcttgatttctgtagaataaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 taacatcacagaacttaaaatgggattttattacaatggcttgatttctgtagaataaag 430

                                                                       
Query: 425 tatagcaaatatgactgacgatcctaatgtctaggttcctcaactttggctttgtgagac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tatagcaaatatgactgacgatcctaatgtctaggttcctcaactttggctttgtgagac 370

                                                                       
Query: 485 acaaaccatatttttattcagtagttttaaatgataaaatgaagtgtgcaacacacaata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acaaaccatatttttattcagtagttttaaatgataaaatgaagtgtgcaacacacaata 310

                                                                       
Query: 545 acagaactgtgagagttacaattcaaatactcatttggtatgagcaatatttctttattc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acagaactgtgagagttacaattcaaatactcatttggtatgagcaatatttctttattc 250

                                                       
Query: 605 cattatattttctatgtcctataaagtactgtgatggatatgtg 648
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cattatattttctatgtcctataaagtactgtgatggatatgtg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space:   662882
Effective search space used:   662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)