BAC Information

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BAC

Clone NameMSMg01-108E11
Chromosome1 (Build37)
Map Location 190,887,552 - 190,978,734
singlet/doubletdoublet
Overlap genenone
Upstream geneEsrrg, Ush2a, Kctd3
Downstream geneKcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108E11.T7 (MSMg01no108_e11.b1)MSMg01-108E11.TJ (MSMg01no108_e11.g1)
ACCAG321769AG321770
length686677
length of high quality
(start - end)
508 (51 - 558)516 (79 - 594)
definitionCHROMAT_FILE: MSMg01no108_e11.b1 PHD_FILE: MSMg01no108_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:05 2005CHROMAT_FILE: MSMg01no108_e11.g1 PHD_FILE: MSMg01no108_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,978,234 - 190,978,734)(190,887,552 - 190,888,061)
sequence
NGGGTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACATGACTGATATTTTTTCTACTCTGTGCATGCTTACAG
GAAACAGGATTCTGCTGCCTGGGGTAGTAGCATTTGTCTCTGCAATGTCT
TCGTGTGGGTAGTGGTTAGGGAAATGGATGTTGAAGAGATAGTCAGGAGG
GATCATCTATAAAAGAGTTCTGCTGGGTGTTCTGCCACAAAGACTGAGGA
GAGAGAAAAGGTGGGAGCAAGGGAACATGGGATTGTTAGCTAAAGGCTTT
GAGCCGTTCCTTCCTGTAGTTGCTCCAGGAGGAGAAGAGACTGAGCTGAT
AAATCTGGGTCAGGGTGTTCTGCTCCACTGGAGTACAGAGGCAGTCATGG
GTGGAATGGATGGTTTTAATATTCCACACTTAGCAATGCTCAGTTTTGGA
GTACAATGAAAGCAATTAGAAGTTAACTAGGATACTTTCTACGTACAGTA
TCCAAGCATCCCTTGCCTTCATCTTGTTCTGTTTCCGGTCAGTTTCAGTA
TTACACTTGCATTTATCCGTGTCTGTGTGTAGCCGTTTGTGTGTTATATG
CATGAGTGGTTTGCCTGTTTACTCTGTGTGTACCTGGTGCCTTATGGAGG
CCCGAATATTCCATCTCCTGGAATTCTTGTTATAGG
TCTTTTCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCATTCATGTTTACCTATT
GCAGCAACTTTGAATGGGAGGTTGAGCTTTCATCCTGGAGAGGAGTCACT
CTGCCTTCCTGGGTGACAGGATTCTCTGCCATGGCCAGTGCATCTGGTAG
GTTTGGCTCTCTCCCAGTTTTACAGTGGGGCCATCTCAGTGAGTGGCTAC
TTCTTTCATTATTTTTTAATTAATCACAGGAAGGAATCATTTCATCAAAG
TCATTTTCACACACATTTCCCATCTGCTCTGTTCTTTCCTTCCCCCATGC
TCCCCACATCCTATGGCTGGTAGAATTCTGATGTCTAGAAGCTATGGAAA
TGCCAGGCAGGTGTAGTGGCTAGTGTATAATTCCACCACTTAGAAGGCAG
AAACAGCATCCATCAAGCAATCTGGCTCACAAGACTAGCCTGATCAGTGA
GCTCTGGGTTTGACTGAGAGACCCTGCCTCTCAGTAAATAAGGTAATAGA
GGAAGACACCTGATATCAGTAAGCCTTGAATCGCCACACTCAGACCACAG
AGGCCATATAAGGGCTTAGACAACATGGTGGCAGGATAGTCATCTGGAAT
GAGTCTGCAGCATTCAGACATATGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_e11.b1 MSMg01no108_e11.b1 CHROMAT_FILE:
MSMg01no108_e11.b1 PHD_FILE: MSMg01no108_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:05 2005
         (508 letters)



>mm_chr1_190978030_190978934
          Length = 905

 Score =  917 bits (474), Expect = 0.0
 Identities = 496/506 (98%), Gaps = 7/506 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacatgactgatattttttctactctgtgcatgcttacaggaaacaggattctg 64
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 705 gaattccacatgactgatattttttctactctgtgcatgcctacaggaaacaggattctg 646

                                                                       
Query: 65  ctgcctggggtagtagcatttgtctctgcaatgtcttcgtgtgggtagtggttagggaaa 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 645 ctgcctggggtagtagcatttgtctctgcaatgtctttgtgtgggtagtggttagggaaa 586

                                                                       
Query: 125 tggatgttgaagagatagtcaggagggatcatctataaaagagttctgctgggtgttctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tggatgttgaagagatagtcaggagggatcatctataaaagagttctgctgggtgttctg 526

                                                                       
Query: 185 ccacaaagactgaggagagagaaaaggtgggagcaagggaacatgggattgttagctaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ccacaaagactgaggagagagaaaaggtgggagcaagggaacatgggattgttagctaaa 466

                                                                       
Query: 245 ggctttgagccgttccttcctgtagttgctccaggaggagaagag--actgagctgataa 302
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 465 ggctttgagccgttccttcctgtagttgctccaggaggagaagagacactgagctgataa 406

                                                                       
Query: 303 atctgggtcagggtgttctgctccactggagtacagaggcagtcatgggtggaatggatg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atctgggtcagggtgttctgctccactggagtacagaggcagtcatgggtggaatggatg 346

                                                                       
Query: 363 gttttaatattccacacttagcaatgctcagttttggagtacaatgaaagcaattagaag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gttttaatattccacacttagcaatgctcagttttggagtacaatgaaagcaattagaag 286

                                                                       
Query: 423 ttaactaggatactttctacgtacagtatccaagcatcccttgccttcatcttgttctgt 482
           |||||||||||||||||||  |   |||||||||||||||||||| ||||||||||||||
Sbjct: 285 ttaactaggatactttcta--t---gtatccaagcatcccttgccctcatcttgttctgt 231

                                     
Query: 483 ttccggtcagtttcagtattacactt 508
           ||||||||||||||||||||||||||
Sbjct: 230 ttccggtcagtttcagtattacactt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 905
Length adjustment: 10
Effective length of query: 498
Effective length of database: 895
Effective search space:   445710
Effective search space used:   445710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no108_e11.g1 MSMg01no108_e11.g1 CHROMAT_FILE:
MSMg01no108_e11.g1 PHD_FILE: MSMg01no108_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:05 2005
         (516 letters)



>mm_chr1_190887348_190888261
          Length = 914

 Score =  890 bits (460), Expect = 0.0
 Identities = 499/512 (97%), Gaps = 2/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   cattcatgtttacctattgcagcaactttgaatgggaggttgagctttcatcctggagag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 cattcatgtttacctattgcagcaactttgaatgggaggttgagctttcatactggagag 264

                                                                       
Query: 65  gagtcactctgccttcctgggtgacaggattctctgccatggccagtgcatctggtaggt 124
           || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaatcactctgcc-tcctgggtgacaggattctctgccatggccagtgcatctggtaggt 323

                                                                       
Query: 125 ttggctctctcccagttttacagtggggccatctcagtgagtggctacttctttcattat 184
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 324 ttggctctctcccagttttacagtggggtcatctcagtgagcggctacttctttcattat 383

                                                                       
Query: 185 tttttaattaatcacaggaaggaatcatttcatcaaagtcattttcacacacatttccca 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 384 tttttaattaatcacaggaaggaatcatttcatc-aagtcattttcacacaaatttccca 442

                                                                       
Query: 245 tctgctctgttctttccttcccccatgctccccacatcctatggctggtagaattctgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctgctctgttctttccttcccccatgctccccacatcctatggctggtagaattctgat 502

                                                                       
Query: 305 gtctagaagctatggaaatgccaggcaggtgtagtggctagtgtataattccaccactta 364
           ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 503 gtctagaagctacagaaatgccaggcaggtgtagtggctcgtgtataattccaccactta 562

                                                                       
Query: 365 gaaggcagaaacagcatccatcaagcaatctggctcacaagactagcctgatcagtgagc 424
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 563 gaaggcagaaacagcatccatcaagcaatctgtctcacaagactagcctgatcagtgagc 622

                                                                       
Query: 425 tctgggtttgactgagagaccctgcctctcagtaaataaggtaatagaggaagacacctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tctgggtttgactgagagaccctgcctctcagtaaataaggtaatagaggaagacacctg 682

                                           
Query: 485 atatcagtaagccttgaatcgccacactcaga 516
           |||||||||||||||| ||| |||||||||||
Sbjct: 683 atatcagtaagccttggatctccacactcaga 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 914
Length adjustment: 10
Effective length of query: 506
Effective length of database: 904
Effective search space:   457424
Effective search space used:   457424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)