Query= MSMg01no108_e23.b1 MSMg01no108_e23.b1 CHROMAT_FILE:
MSMg01no108_e23.b1 PHD_FILE: MSMg01no108_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:07 2005
(583 letters)
>mm_chr1_11191431_11192413
Length = 983
Score = 1023 bits (529), Expect = 0.0
Identities = 572/591 (96%), Gaps = 8/591 (1%)
Strand = Plus / Minus
Query: 1 cagggtcttctgtgtatgaggagctgagatacttctatcaccatctaacttcagaatttt 60
|||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 862 cagggtcttctgtgtatgtggacctgagatacttctatcaccatctaacttaagaatttt 803
Query: 61 ttcatcaggaccgaagatgccttggggcatctaccacagttcttagctccaggcaatcag 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ttcatcaggactgaagatgccttggggcatctaccacagttcttagctccaggcaatcag 743
Query: 121 atgtctaccttgatctctgaaatgtgctcagtaggcttcatcacaatgtcagcaaacagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atgtctaccttgatctctgaaatgtgctcagtaggcttcatcacaatgtcagcaaacagc 683
Query: 181 ttacattttgttgttggttt--------ttttgttttgttttgttttctgtgccttttgt 232
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 682 ttacattttgttgttggttttttttttgttttgttttgttttgttttctgtgcattttgt 623
Query: 233 taccaggctagtttccttaatactgtgcttccaagactgtgcttcatctgtagtttagca 292
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 622 taccaggctagtttccttaggaccgtgcttccaagactgtgcttcatctgtagtttagca 563
Query: 293 cccacctgcacttcaaggtggcctatgcatgcctgaacaagattttataatatgaaacac 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cccacctgcacttcaaggtggcctatgcatgcctgaacaagattttataatatgaaacac 503
Query: 353 aatattttatttatttagtcatccactgataaatacccaagttgctagaattgaataata 412
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 502 aatattttatttatttagtcatccactgataaatacccaagttgctaaaattgaataaga 443
Query: 413 atgataggactgtttgtcacaagttctttttaaaaaatcatttatttacttttgttttat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atgataggactgtttgtcacaagttctttttaaaaaatcatttatttacttttgttttat 383
Query: 473 gtgcattttttgtctgcatgtatgttgtgtgaggttattcgatctatggagttacagaca 532
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 382 gtgcattttttgtctgcatgtatgttgtgtgagggtattcgatctatggagttacagaca 323
Query: 533 gttgtgcacttcaatatgggtgctgggaattgaacatggtgctttggaaga 583
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttgtgcacttcaatatgggtgctgggaattgaacatggtgctttggaaga 272
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_e23.g1 MSMg01no108_e23.g1 CHROMAT_FILE:
MSMg01no108_e23.g1 PHD_FILE: MSMg01no108_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:08 2005
(498 letters)
>mm_chr1_11051638_11052539
Length = 902
Score = 729 bits (377), Expect = 0.0
Identities = 486/565 (86%), Gaps = 70/565 (12%)
Strand = Plus / Plus
Query: 1 caatctctataatctctaatgagcaagatttggatggtctactggagtgcagaaaagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatctctataatctctaatgagcaagatttggatggtctactggagtgcagaaaagatt 260
Query: 61 gtagtacccaaacacaaaagtaataccagaagcatttcttgtaaaacatagggaaggggt 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagtaccccaacacaaaagtaataccagaagcatttcttgtaaaacatagggaaggggt 320
Query: 121 ccagggatagagcttagtggtggtatgtgttctgggatagtaataaag-tcactgcagtc 179
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 321 ccagggatggagcttagtggtggtatgtgttctgggatagtaataaagat-actgcagtc 379
Query: 180 atcataggagccaactgagaaac----ctgattacccaggtgacagagggttgctagaga 235
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 380 atcataggagccaactgagaaacattgctgattacccaggtggcagagggttgctagaga 439
Query: 236 gtatgtagtgcttgagggtctgggttccattcccaccccaccctaatatacatccacaac 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 gtatgtagtgcttgagggtctgggttccattcccaccccaccctaatatacatccacagc 499
Query: 296 atgacacacacacacacacatacacacatacagagagagagagagaga------------ 343
|| ||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct: 500 atcacacatacacacacacacacacacacacagagagagagagagagagagagagagaga 559
Query: 344 ------------------------------------------cagaga--------caga 353
|||||| ||||
Sbjct: 560 gagagagagagagagagagagggagagggagagagagacagacagagagagagagacaga 619
Query: 354 gacagagagacggggggaagttgtgaacattttgaaaatagaaattaaaaaatggtaggt 413
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gacagagagatgggggg--gttgtgaacattttgaaaatagaaattaaaaaatggtaggt 677
Query: 414 aaataaaaattaatttttttgcttccggtctgtctgggccagtgccctgagctgaccttg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaataaaaattaatttttttgcttccggtctgtctgggccagtgccctgagctgaccttg 737
Query: 474 ggtgcaaactctgaagccagcccta 498
|||||||||||||||||||||||||
Sbjct: 738 ggtgcaaactctgaagccagcccta 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 902
Length adjustment: 10
Effective length of query: 488
Effective length of database: 892
Effective search space: 435296
Effective search space used: 435296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
