BAC Information

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BAC

Clone NameMSMg01-108E23
Chromosome1 (Build37)
Map Location 11,051,838 - 11,192,292
singlet/doubletdoublet
Overlap genenone
Upstream geneCspp1, Arfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik, LOC665262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108E23.T7 (MSMg01no108_e23.b1)MSMg01-108E23.TJ (MSMg01no108_e23.g1)
ACCAG321790AG321791
length720718
length of high quality
(start - end)
583 (71 - 653)498 (71 - 568)
definitionCHROMAT_FILE: MSMg01no108_e23.b1 PHD_FILE: MSMg01no108_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:07 2005CHROMAT_FILE: MSMg01no108_e23.g1 PHD_FILE: MSMg01no108_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,191,702 - 11,192,292)(11,051,838 - 11,052,399)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATCCGCGGAATTC
ACCCAATCAGTACCATAGAACAGGGTCTTCTGTGTATGAGGAGCTGAGAT
ACTTCTATCACCATCTAACTTCAGAATTTTTTCATCAGGACCGAAGATGC
CTTGGGGCATCTACCACAGTTCTTAGCTCCAGGCAATCAGATGTCTACCT
TGATCTCTGAAATGTGCTCAGTAGGCTTCATCACAATGTCAGCAAACAGC
TTACATTTTGTTGTTGGTTTTTTTGTTTTGTTTTGTTTTCTGTGCCTTTT
GTTACCAGGCTAGTTTCCTTAATACTGTGCTTCCAAGACTGTGCTTCATC
TGTAGTTTAGCACCCACCTGCACTTCAAGGTGGCCTATGCATGCCTGAAC
AAGATTTTATAATATGAAACACAATATTTTATTTATTTAGTCATCCACTG
ATAAATACCCAAGTTGCTAGAATTGAATAATAATGATAGGACTGTTTGTC
ACAAGTTCTTTTTAAAAAATCATTTATTTACTTTTGTTTTATGTGCATTT
TTTGTCTGCATGTATGTTGTGTGAGGTTATTCGATCTATGGAGTTACAGA
CAGTTGTGCACTTCAATATGGGTGCTGGGAATTGAACATGGTGCTTTGGA
AGAACAGTCAGTGCTCTTAACCACTGAGTCATCTGTCACAAGCTCCTGTC
CAAGTTCTTAAATGAATAGT
TGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAATCTCTATAATCTCTAATGAGCAAGATT
TGGATGGTCTACTGGAGTGCAGAAAAGATTGTAGTACCCAAACACAAAAG
TAATACCAGAAGCATTTCTTGTAAAACATAGGGAAGGGGTCCAGGGATAG
AGCTTAGTGGTGGTATGTGTTCTGGGATAGTAATAAAGTCACTGCAGTCA
TCATAGGAGCCAACTGAGAAACCTGATTACCCAGGTGACAGAGGGTTGCT
AGAGAGTATGTAGTGCTTGAGGGTCTGGGTTCCATTCCCACCCCACCCTA
ATATACATCCACAACATGACACACACACACACACATACACACATACAGAG
AGAGAGAGAGAGACAGAGACAGAGACAGAGAGACGGGGGGAAGTTGTGAA
CATTTTGAAAATAGAAATTAAAAAATGGTAGGTAAATAAAAATTAATTTT
TTTGCTTCCGGTCTGTCTGGGCCAGTGCCCTGAGCTGACCTTGGGTGCAA
ACTCTGAAGCCAGCCCTACAACACCTAGAGGCAGCTCCACTCCCAGGTCC
TCTAACACACCCATTATCAGAGGGTCCCAGGAGCTTGGTCACACCTGTAT
CTCAAGGTCACAAAGGCAGCTTGACTGCCAAAACCTCAGGATTGCTGGAT
CCCAGAATCACAGGATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_e23.b1 MSMg01no108_e23.b1 CHROMAT_FILE:
MSMg01no108_e23.b1 PHD_FILE: MSMg01no108_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:07 2005
         (583 letters)



>mm_chr1_11191431_11192413
          Length = 983

 Score = 1023 bits (529), Expect = 0.0
 Identities = 572/591 (96%), Gaps = 8/591 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggtcttctgtgtatgaggagctgagatacttctatcaccatctaacttcagaatttt 60
           |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 862 cagggtcttctgtgtatgtggacctgagatacttctatcaccatctaacttaagaatttt 803

                                                                       
Query: 61  ttcatcaggaccgaagatgccttggggcatctaccacagttcttagctccaggcaatcag 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ttcatcaggactgaagatgccttggggcatctaccacagttcttagctccaggcaatcag 743

                                                                       
Query: 121 atgtctaccttgatctctgaaatgtgctcagtaggcttcatcacaatgtcagcaaacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atgtctaccttgatctctgaaatgtgctcagtaggcttcatcacaatgtcagcaaacagc 683

                                                                       
Query: 181 ttacattttgttgttggttt--------ttttgttttgttttgttttctgtgccttttgt 232
           ||||||||||||||||||||        ||||||||||||||||||||||||| ||||||
Sbjct: 682 ttacattttgttgttggttttttttttgttttgttttgttttgttttctgtgcattttgt 623

                                                                       
Query: 233 taccaggctagtttccttaatactgtgcttccaagactgtgcttcatctgtagtttagca 292
           |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||
Sbjct: 622 taccaggctagtttccttaggaccgtgcttccaagactgtgcttcatctgtagtttagca 563

                                                                       
Query: 293 cccacctgcacttcaaggtggcctatgcatgcctgaacaagattttataatatgaaacac 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cccacctgcacttcaaggtggcctatgcatgcctgaacaagattttataatatgaaacac 503

                                                                       
Query: 353 aatattttatttatttagtcatccactgataaatacccaagttgctagaattgaataata 412
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 502 aatattttatttatttagtcatccactgataaatacccaagttgctaaaattgaataaga 443

                                                                       
Query: 413 atgataggactgtttgtcacaagttctttttaaaaaatcatttatttacttttgttttat 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atgataggactgtttgtcacaagttctttttaaaaaatcatttatttacttttgttttat 383

                                                                       
Query: 473 gtgcattttttgtctgcatgtatgttgtgtgaggttattcgatctatggagttacagaca 532
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 382 gtgcattttttgtctgcatgtatgttgtgtgagggtattcgatctatggagttacagaca 323

                                                              
Query: 533 gttgtgcacttcaatatgggtgctgggaattgaacatggtgctttggaaga 583
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttgtgcacttcaatatgggtgctgggaattgaacatggtgctttggaaga 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no108_e23.g1 MSMg01no108_e23.g1 CHROMAT_FILE:
MSMg01no108_e23.g1 PHD_FILE: MSMg01no108_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:08 2005
         (498 letters)



>mm_chr1_11051638_11052539
          Length = 902

 Score =  729 bits (377), Expect = 0.0
 Identities = 486/565 (86%), Gaps = 70/565 (12%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatctctataatctctaatgagcaagatttggatggtctactggagtgcagaaaagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatctctataatctctaatgagcaagatttggatggtctactggagtgcagaaaagatt 260

                                                                       
Query: 61  gtagtacccaaacacaaaagtaataccagaagcatttcttgtaaaacatagggaaggggt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagtaccccaacacaaaagtaataccagaagcatttcttgtaaaacatagggaaggggt 320

                                                                       
Query: 121 ccagggatagagcttagtggtggtatgtgttctgggatagtaataaag-tcactgcagtc 179
           |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 321 ccagggatggagcttagtggtggtatgtgttctgggatagtaataaagat-actgcagtc 379

                                                                       
Query: 180 atcataggagccaactgagaaac----ctgattacccaggtgacagagggttgctagaga 235
           |||||||||||||||||||||||    ||||||||||||||| |||||||||||||||||
Sbjct: 380 atcataggagccaactgagaaacattgctgattacccaggtggcagagggttgctagaga 439

                                                                       
Query: 236 gtatgtagtgcttgagggtctgggttccattcccaccccaccctaatatacatccacaac 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 gtatgtagtgcttgagggtctgggttccattcccaccccaccctaatatacatccacagc 499

                                                                       
Query: 296 atgacacacacacacacacatacacacatacagagagagagagagaga------------ 343
           || ||||| ||||||||||| ||||||| |||||||||||||||||||            
Sbjct: 500 atcacacatacacacacacacacacacacacagagagagagagagagagagagagagaga 559

                                                                       
Query: 344 ------------------------------------------cagaga--------caga 353
                                                     ||||||        ||||
Sbjct: 560 gagagagagagagagagagagggagagggagagagagacagacagagagagagagacaga 619

                                                                       
Query: 354 gacagagagacggggggaagttgtgaacattttgaaaatagaaattaaaaaatggtaggt 413
           |||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gacagagagatgggggg--gttgtgaacattttgaaaatagaaattaaaaaatggtaggt 677

                                                                       
Query: 414 aaataaaaattaatttttttgcttccggtctgtctgggccagtgccctgagctgaccttg 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaataaaaattaatttttttgcttccggtctgtctgggccagtgccctgagctgaccttg 737

                                    
Query: 474 ggtgcaaactctgaagccagcccta 498
           |||||||||||||||||||||||||
Sbjct: 738 ggtgcaaactctgaagccagcccta 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 902
Length adjustment: 10
Effective length of query: 488
Effective length of database: 892
Effective search space:   435296
Effective search space used:   435296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)