BAC Information

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BAC

Clone NameMSMg01-108I05
Chromosome1 (Build37)
Map Location 153,480,752 - 153,481,379
singlet/doubletsinglet
Overlap geneNiban
Upstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2
Downstream geneEdem3, 1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108I05.T7 (MSMg01no108_i05.b1)MSMg01-108I05.TJ (MSMg01no108_i05.g1)
ACCAG321940AG321941
length710704
length of high quality
(start - end)		---631 (74 - 704)
definitionCHROMAT_FILE: MSMg01no108_i05.b1 PHD_FILE: MSMg01no108_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:24 2005CHROMAT_FILE: MSMg01no108_i05.g1 PHD_FILE: MSMg01no108_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXX

NCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGGGGCTATTAAAGCCAATTTTCTA
CTACCTGCCCAAGTCTCCTACTGGTATGCCCTGCTTCTACCAAGGTGCCT
TTACGCTAGCCTCCCACTGTATGTGAAAAGTGTTTCTGGGATCTGAAAAT
CTGCATGTGACATCCTCAACACAGCACCAAGTCACTCTTACAAAGAAAAT
TGCAGATTTCTTGTATTTACTTAATGACTGGTTCAAATGTAAAATAAAAC
AGCTAATAGCATCAAAAGATGAAGGAAAAAAACCAAAGTCGATCTAAAAT
GCATCTAGGCACTAGATTGAACCTGTCTGGACCTACATAAGGGAACACCC
ACTTTGAAGACTTTGAGGATAAAGACAAAACCTGGGGTTGGGTCAACAAC
ACCACTGTGGTAGGAAGGTGGACTCTGGACTCAGGCAAAGATGGCGGAAG
AATTTCTGCCATTTGCTGCCTATGTGGAGTAGCATCACAGAATTATTATA
ACAATCACACGAAATACCTCGTTAAAAGTTCTTGGTGCCATGGCTGGCAC
ACAGTAACTGAAAGTGGCTAGAAGGTTGGGGATACTGGAAGCCCCCTAGC
CAAGTACCAGAAGACACCCCTCAGTTTGAACTAATGAACTAAGAAAATAA
AAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_i05.g1 MSMg01no108_i05.g1 CHROMAT_FILE:
MSMg01no108_i05.g1 PHD_FILE: MSMg01no108_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:24 2005
         (631 letters)



>mm_chr1_153480720_153481750
          Length = 1031

 Score = 1083 bits (560), Expect = 0.0
 Identities = 612/630 (97%), Gaps = 2/630 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggggctattaaagccaattttctactacctgcccaagtctcctactggtatgccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tgtggggctattaaagccaattttctactacctgcccaagtctcctactggtatgccctg 601

                                                                       
Query: 61  cttctaccaaggtgcctttacgctagcctcccactgtatgtgaaaagtgtttctgggatc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cttctaccaaggtgcctttacactagcctcccactgtatgtgaaaagtgtttctgggatc 541

                                                                       
Query: 121 tgaaaatctgcatgtgacatcctcaacacagcaccaagtcactcttacaaagaaaattgc 180
           |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgaatatctgcgtgtgacaccctcaacacagcaccaagtcactcttacaaagaaaattgc 481

                                                                       
Query: 181 agatttcttgtatttacttaatgactggttcaaatgtaaaataaaacagctaatagcatc 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 480 agatttcttgtatttacttaatgactggttcaaatgtaaagtaaaacagctaatagcatc 421

                                                                       
Query: 241 aaaagatgaaggaaaaaaaccaaagtcgatctaaaatgcatctaggcactagattgaacc 300
           ||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 420 aaaagatgaaggaaaaaaaacaaagtcgatctaaaatgcatctagacattagattgaacc 361

                                                                       
Query: 301 tgtctggacctacataagggaacacccactttgaagactttgaggataaagacaaaacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 360 tgtctggacctacataagggaacacccactttgaagactttgaggataaaggcaaaacct 301

                                                                       
Query: 361 ggggttgggtcaacaacaccactgtggtaggaaggtggactctggactcaggcaaagatg 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ggggttgggtcaacaataccactgtggtaggaaggtggactctggactcaggcaaagatg 241

                                                                       
Query: 421 gcggaagaatttctgccatttgctgcctatgtggagtagcatcacagaattattataaca 480
           || |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 240 gcagaagtatttctgccatttgctggctatgtggagtagcttcacagaattattataaca 181

                                                                       
Query: 481 atcacacgaaatacctcgttaaaagttcttggtgccatggctggcacacagtaactgaaa 540
           ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  |||
Sbjct: 180 atcacacgaaatacctcattaaaagttcttggtgccatggctggcacagagtaac--aaa 123

                                                                       
Query: 541 gtggctagaaggttggggatactggaagccccctagccaagtaccagaagacacccctca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gtggctagaaggttggggatactggaagccccctagccaagtaccagaagacacccctca 63

                                         
Query: 601 gtttgaactaatgaactaagaaaataaaaa 630
           ||||||||||||||||||||||||||||||
Sbjct: 62  gtttgaactaatgaactaagaaaataaaaa 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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