Query= MSMg01no108_i08.b1 MSMg01no108_i08.b1 CHROMAT_FILE:
MSMg01no108_i08.b1 PHD_FILE: MSMg01no108_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:25 2005
(660 letters)
>mm_chr1_100591169_100592227
Length = 1059
Score = 735 bits (380), Expect = 0.0
Identities = 413/424 (97%), Gaps = 2/424 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtggaaacatgaacattaaagagcctgaatgtttccttagttacagaagtgtt 64
|||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 422 gaattcagtggaaagatgaacattagagagcctgaatgttgccttagttacagaagtgtt 363
Query: 65 ttattactgttatgtgcatatatagtaatactataggtaagttaagcaaaataattaata 124
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||
Sbjct: 362 ttattactgttatgtgcatatataataatattataggtaagctaagcaaaataattacta 303
Query: 125 tgcattaaaacaattttagaagaccaaacttcatcagaaattgatataaaaatgccatca 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tacattaaaacaattttagaagaccaaacttcatcagaaattgatataaaaatgccatca 243
Query: 185 aagtttacaataacaccgactaatattttaatcttgatttgatggttaatattgattgcc 244
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 242 aagtttacaataacaccgactaata-tttaatcttgatttgatggttaatattgattgcc 184
Query: 245 accttgaaagcaccaaggatcacacagaagacagttctctaggcatgtctatgaagtggt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 accttgaaagcaccaaggatcacacagaagacagttctctaggcatgtctatgaagtggt 124
Query: 305 tgtttgattaactgaggtagatatacacaccatttatgtggaccttcatcatcctatggg 364
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 123 tgtttgattaactgaggtagatatacacaccatttatgtggaccttcatcat-ctatgag 65
Query: 365 ctctagtctagggttgaataaaaagaagaaagtagacgaacacagttccaacacttattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ctctagtctagggttgaataaaaagaagaaagtagacgaacacagttccaacacttattt 5
Query: 425 atct 428
||||
Sbjct: 4 atct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1059
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1049
Effective search space: 681850
Effective search space used: 681850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_i08.g1 MSMg01no108_i08.g1 CHROMAT_FILE:
MSMg01no108_i08.g1 PHD_FILE: MSMg01no108_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:25 2005
(507 letters)
>mm_chr1_100460631_100461537
Length = 907
Score = 905 bits (468), Expect = 0.0
Identities = 499/522 (95%), Gaps = 21/522 (4%)
Strand = Plus / Plus
Query: 1 acagaagagtctaaagcagaagacatggacaaatgctacttatggcttgctttcaggccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaagagtctaaagcagaagacatggacaaatgctacttatggcttgctttcaggccc 260
Query: 61 atatttagccaccttcctttaaaataatcttttttttggaattagtattcaaatttagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatttagccaccttcctttaaaataatcttttttttggaattagtattcaaatttagtt 320
Query: 121 tgaattaatatactactgtatgcttgtgtgtccacatgttggaatgacaatgtgttcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaattaatatactactgtatgcttgtgtgtccacatgttggaatgacaatgtgttcatg 380
Query: 181 gattcctatagaggccagcgataagatctactggaaaagtcttgtcctctgatagtcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattcctatagaggccagcgataagatctactggaaaagtcttgtcctctgatagtcctg 440
Query: 241 agcattctttcctgatgagctatctctccagctccagctccagttccagctttttttttt 300
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 agcattctttcctgatgagctatctctccagctccag------ttccagctttttttttt 494
Query: 301 ttttttttttttt---------------ggacacccaggccaaccttcctagaaatgata 345
||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 495 ttttttttttttttttttttttttttttgtacacccaggccaaccttcctagaaatgata 554
Query: 346 ccaccctctacaagctcatcatttttttaaatcacttaatgtcctgggttagttttttgt 405
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 555 ccaccctctacaagctcatcatttttttaaatcacttagtgtcctgggttagttttttgt 614
Query: 406 caacttgacaggagttatcttggaagaggagtttacttgagggaatgcctctatcatatt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 caacttgacaggagttatcttggaagaggagtttacttgagggaatgcctctatcatatt 674
Query: 466 ttctgaggcaagtctgtaaagcattttcttgattgttcattg 507
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttctgaggcaagtctgtaaagcattttcttgattgttcattg 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
