BAC Information

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BAC

Clone NameMSMg01-108J07
Chromosome1 (Build37)
Map Location 82,210,973 - 82,211,351
singlet/doubletsinglet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108J07.T7 (MSMg01no108_j07.b1)MSMg01-108J07.TJ (MSMg01no108_j07.g1)
ACCAG321990AG321991
length723722
length of high quality
(start - end)
387 (57 - 443)229 (134 - 362)
definitionCHROMAT_FILE: MSMg01no108_j07.b1 PHD_FILE: MSMg01no108_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:29 2005CHROMAT_FILE: MSMg01no108_j07.g1 PHD_FILE: MSMg01no108_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTCCNCTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCTGGCCTGCCGCTTGGAGATCCAGGTGGGTCTGA
GTGTTTGCCCAAGGCTTCCTTCCCGATTGCTTAACATCTTGCCCGCCTTT
CTGTAGACCATCATTGTCCTGGCTTTCTCTTGATGGTTCTAAGTTAAATG
CCAGAAGTCACAGGACACAAGGACCTGTTGAAGAAGTCTTCCTCAAATGA
CCCACAGTATCCAATGGGAGACCACAAGCAAGCTACTTATTTTTCTAAAT
ACAAGCTGAAACTTCATGAAATGGGGACTCATTATGCCTCTACTAAGACC
CTTCTATTGCTGTTTCTGGACTCAGCAAAACCAACACAGAGGGAAGGGGA
GTAACTAGATGTAAAGGCCCCACCTGCTTGTCGCTGCTGTAAAGCAGTGG
TGGTCTTCTGGAACTAAGAGAGTTTCTCAGCTGACTCTTTTTCTCGTCCG
TGCTTCTGTGATGGGGAATCTTTAAGATCTACTTGGTGGTACAAGATGAG
GTTTCCGGAATGGATCCTCCTGTATCAGGCAGCTTCTGTTCAAGAAGGAC
CTTATCCAGGTTTACTTTACACCGCTTATGGCTATTGGCCACTCCGCTGA
CTTCTTGGGAGAAACACAGTTTCCTTGAGATTTTACACCTTTTATACTTG
GTGGTAATGTCCCATCTTGCCCA
TTTTCCCTACGATGATAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTTCCGAGAAATTCTTGTTTGCTCCTCTGTAG
TGCCTTTACATATATACAAACATTATGTATCTTTATGAGAAGCATAAACA
GGAGTGTCTGCAACACAGGTCTGCACCCTGCCTTTGTTCTGTCTGGGTTT
TGTTCAGTACCAGCACCTACATATCGACAACACTATTTTTAATGGCTGTA
TTCTATTTCACTAAAGACATGTAGCATACATTCTTTAGCAAGTTCTGTTC
AGGCATATTGTTTCCAGTCATTTTTTTTTTACCAAGTAGCATTTGAATAT
ACCCTTTCTATATTCACTGTATAGTTATCCCCCCTCTCCTCACAATAGAA
TTTCTGGGACAAATAAAATATGCTTTGCAAATTTGAATAACTCTTCTTCA
ACTGTCCTCTGAAGGGCAGGATATAGTTTGTATAGTTGCTACACCATATA
GAGTGTGTAAAGTTATTTCTGTTTCATATAAATCCGTAAGAAATCCATTA
GGTTTTCTTACCCAGTTTTCCCCATGGTTCTAGAAAGCTACAGGTTATAC
TCATTTTTTCTTATCTTTTACTCTTGAACTTATCCAGATTTATCCAAAAT
CTTCACACCTACATAACCATGCATCTTGTTAACAACTAAACTTTAACGCA
AAATTATATTGTTGTCCTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_j07.b1 MSMg01no108_j07.b1 CHROMAT_FILE:
MSMg01no108_j07.b1 PHD_FILE: MSMg01no108_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:29 2005
         (387 letters)



>mm_chr1_82210769_82211553
          Length = 785

 Score =  667 bits (345), Expect = 0.0
 Identities = 372/381 (97%), Gaps = 2/381 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggcctgccgcttggagatccaggtgggtctgagtgtttgcccaaggcttcct 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggcctgaagcttggagatccaggtgggtctgagtgtttgcccaaggcttcct 264

                                                                       
Query: 65  tcccgattgcttaacatcttgcccgcctttctgtagaccatcattgtcctggctttctct 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 tcccgattgcttaacatcttgcccgcctttctgttgaccatcattgtcctggctttctct 324

                                                                       
Query: 125 tgatggttctaagttaaatgccagaagtcacaggacacaaggacctgttgaagaagtctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatggttctaagttaaatgccagaagtcacaggacacaaggacctgttgaagaagtctt 384

                                                                       
Query: 185 cctcaaatgacccacagtatccaatgggagaccacaagcaagctacttatttttctaaat 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 ccccaaatgacccacagtatccaatgggagaccacaagcaagctacttattttcctaaat 444

                                                                       
Query: 245 acaagctgaaacttcatgaaatggggactcattatgcctctactaagacccttctattgc 304
           |||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||
Sbjct: 445 acaagctgaaacttcatgaaatggggactcag-atgcctctactaaggcccttctattgc 503

                                                                       
Query: 305 tgtttctggactcagcaaaaccaacacagagggaaggggagtaactagatgtaaaggccc 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 t-tttctggactcagcaaaaccaacacagagggaaggggagtaactagatgtaaaggccc 562

                                
Query: 365 cacctgcttgtcgctgctgta 385
           |||||||||||||||||||||
Sbjct: 563 cacctgcttgtcgctgctgta 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 785
Length adjustment: 9
Effective length of query: 378
Effective length of database: 776
Effective search space:   293328
Effective search space used:   293328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)