BAC Information

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BAC

Clone NameMSMg01-108K14
Chromosome1 (Build37)
Map Location 139,853,235 - 139,976,906
singlet/doubletdoublet
Overlap geneLOC100043143, Ptprc
Upstream geneNr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108K14.T7 (MSMg01no108_k14.b1)MSMg01-108K14.TJ (MSMg01no108_k14.g1)
ACCAG322048AG322049
length708711
length of high quality
(start - end)
183 (118 - 300)542 (70 - 611)
definitionCHROMAT_FILE: MSMg01no108_k14.b1 PHD_FILE: MSMg01no108_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:35 2005CHROMAT_FILE: MSMg01no108_k14.g1 PHD_FILE: MSMg01no108_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,976,724 - 139,976,906)(139,853,235 - 139,853,775)
sequence
AATTTGCGGCGCTAAACGACTCCTATTCCGAAAGAGGCGCGGAATTCAGT
TCTTTTCTACAACTTGAAGTGGAATTCAGGGATCAAGTTCACGTCAACAG
TCTTGCCATTCACCCTCCTTCACCCACTGAGACATCTGGTATACCTCACA
CCTTACTTTTCTGTTTGTTCCCTCAGTGCTGGTGTTGGGCGTACAGGCAC
CTACATTGGAATTGATGCCATGCTGGAAGGCCTGGAAGCATATGTCAAAG
TGGATGTCTATGGTTACGTTGTCAAGCTAAGGCGACAGAGGTGTCTGATG
GNGCAATCGGTGGNACTGTCTCATTTTATGTGAATAGGATCCCTGTCCTT
TGTTTACCTCCCTCTTCCGCGGCAGTAGTGAGGAGCTTAAAAGAAATGCG
TATTATTTACAGATTCAAATAGTGAAAGAAGATGATGTTTTAATTTCTGT
AAACTAAAATGAGCTAATTTTCATCAGAAGCACCTTGTACTTGTAGAAGC
ATATAAGTGGAAGCAAGGTGAACTTAATATAGTTTCTAAACAATTAAGTC
ATTTGCATGATTGAGCCCGAAGAGAAAGAACATAGCATTGGCAACTTTTC
ATAACACTGAGCAGACCGGATAAAATGAAAGACGGGAGTATCTTTTGTTT
TCTTTATCTTTCCAGACATGGGCAGCCCCTGTCAGCAGTCCATATGGTCT
TAAATTTG
ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACCAAAGGTTTCCATCAAATCATGGGTTAA
TTAGGATAATGTAAAAGTTATCTCACAGTTTTGTTTATTTGGAATGCTGC
AGAATAAAGAGTACTTTGTATGGACACTGAAATCTGGATTATTTTCTAAA
ATTTAATAATTCATTTCAAAGTGCCTTTTGTCATAATTCTGCCACACAGT
TAATAATGTGAAATTATTAACAGATGAGATTTTAGCTTAATAAACTTCCA
CTTAGTAGACATTTTCTTTCTTGACAAGGTAAAACAGATACATTTAAAAA
ATGTTATTGCTGAAATGGTAGGGGTTTTGTTTGTCTTTGTCTATTTTGTT
TTTAACCAGGAAATAAAGGTAAAAGTAGATTGACATGTAGTATATTTTCA
AAACTCTTTCTCTAGGGTGATAATGCCTCTGAATTTCATCATGATTTTTC
TTAGTTAAATATAAGGTGTAGGGAGAAATGAATTGGGTCTACAGGACAGT
CAATGTGTTTGAAGCAATGTTGGGGAATCCTCTTTTTTTTTTCAGGTGAC
TAATTTGGTTCGTTGCTCCAAATTTCTTCCTTTGACAAAAAAAAAGCAGA
CATGCACTGTAACATTAAGAAATGCAATTTCTACAGATATGAGGACCACA
AGTTATTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_k14.b1 MSMg01no108_k14.b1 CHROMAT_FILE:
MSMg01no108_k14.b1 PHD_FILE: MSMg01no108_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:35 2005
         (183 letters)



>mm_chr1_139976524_139977106
          Length = 583

 Score =  308 bits (159), Expect = 2e-88
 Identities = 177/183 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcacccactgagacatctggtatacctcacaccttacttttctgtttgttccctcagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 cttcacccactgagacatctggtatacctcacaccttacttttctgtttgttcccttagt 324

                                                                       
Query: 61  gctggtgttgggcgtacaggcacctacattggaattgatgccatgctggaaggcctggaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctggtgttgggcgtacaggtacctacattggaattgatgccatgctggaaggcctggaa 264

                                                                       
Query: 121 gcatatgtcaaagtggatgtctatggttacgttgtcaagctaaggcgacagaggtgtctg 180
           ||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 263 gcagagggcaaagtggatgtctatggttatgttgtcaagctaaggcgacagaggtgtctg 204

              
Query: 181 atg 183
           |||
Sbjct: 203 atg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no108_k14.g1 MSMg01no108_k14.g1 CHROMAT_FILE:
MSMg01no108_k14.g1 PHD_FILE: MSMg01no108_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:35 2005
         (542 letters)



>mm_chr1_139853035_139853976
          Length = 942

 Score = 1023 bits (529), Expect = 0.0
 Identities = 538/541 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccaaaggtttccatcaaatcatgggttaattaggataatgtaaaagttatctcacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccaaaggtttccatcaaatcatgggttaattaggataatgtaaaagttatctcacagt 260

                                                                       
Query: 61  tttgtttatttggaatgctgcagaataaagagtactttgtatggacactgaaatctggat 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtttatttgaaatgctgcagaataaagagtactttgtatggacactgaaatctggat 320

                                                                       
Query: 121 tattttctaaaatttaataattcatttcaaagtgccttttgtcataattctgccacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttctaaaatttaataattcatttcaaagtgccttttgtcataattctgccacacag 380

                                                                       
Query: 181 ttaataatgtgaaattattaacagatgagattttagcttaataaacttccacttagtaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaataatgtgaaattattaacagatgagattttagcttaataaacttccacttagtaga 440

                                                                       
Query: 241 cattttctttcttgacaaggtaaaacagatacatttaaaaaatgttattgctgaaatggt 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattttctttcttgacaaagtaaaacagatacatttaaaaaatgttattgctgaaatggt 500

                                                                       
Query: 301 aggggttttgtttgtctttgtctattttgtttttaaccaggaaataaaggtaaaagtaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggggttttgtttgtctttgtctattttgtttttaaccaggaaataaaggtaaaagtaga 560

                                                                       
Query: 361 ttgacatgtagtatattttcaaaactctttctctagggtgataatgcctctgaatttcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgacatgtagtatattttcaaaactctttctctagggtgataatgcctctgaatttcat 620

                                                                       
Query: 421 catgatttttcttagttaaatataaggtgtagggagaaatgaattgggtctacaggacag 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 catgatttttcttagttaaatataaggtgtagggagaaatgaattgggtctacaggccag 680

                                                                       
Query: 481 tcaatgtgtttgaagcaatgttggggaatcctcttttttttttcaggtgactaatttggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaatgtgtttgaagcaatgttggggaatcctcttttttttttcaggtgactaatttggt 740

            
Query: 541 t 541
           |
Sbjct: 741 t 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)