BAC Information

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BAC

Clone NameMSMg01-108P02
Chromosome1 (Build37)
Map Location 91,056,843 - 91,198,051
singlet/doubletdoublet
Overlap geneLOC383542
Upstream geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
Downstream geneEG665688, Centg2, Gbx2, Asb18, Iqca, Cxcr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108P02.T7 (MSMg01no108_p02.b1)MSMg01-108P02.TJ (MSMg01no108_p02.g1)
ACCAG322253AG322254
length706704
length of high quality
(start - end)
244 (69 - 312)440 (79 - 518)
definitionCHROMAT_FILE: MSMg01no108_p02.b1 PHD_FILE: MSMg01no108_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:57 2005CHROMAT_FILE: MSMg01no108_p02.g1 PHD_FILE: MSMg01no108_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,056,843 - 91,057,086)(91,197,612 - 91,198,051)
sequence
CTAAATTTGCGGCGCTATACGACTCCTATTCCAAGAGGACCGCGGAATTC
TCCATTCTTCGTAAGGATCCAAGAACACACATGTGTATGTGTGTATATGT
ATGTGCATATATGTTTGTATATGTAAACATATACATGTATGTGTGCATAT
GTGTGTTACTGTAGGCATGGATGTGCACATGTGTTTCCAGGGTGTACTCA
CCTTTGCCTGCAAGTGGAGTCCTCAAGTCTAGAGCCTCTCGCTCTCTATC
ATACCTGTAATGGCTATTCCTGGTTGTCAACTTGACTATATCTGGAATGA
ACTACAATCCAGAATTGTATAGCTCACCTGTGAGCCAGATCTTGAGGCTG
TAAGACTCAAGTTTCTGACCTGGATCTTGACATGGAGATCTAGAGGCATA
CTGCCCATGAAAAGCTTAGACCCAGGCAAGGTAGTACATGTCTTTAATCC
TAGGAGACTGAGACAAGGAGATCTCTGACCTCAAGGTCACGCTGGGATAA
AGTAAGTCTTAAATCCAGCCACGGTGTTAACCATCTTTTAATTTGGTTCA
CACCTTCTGCTGCAGACTTACATAATGACCTTGTGAACATGAAGATTTGT
TCCTCCTTTGCCCGCTTGCACTTAATTGCCAGCATCTTTGTTGGAACTTA
CTGGTACTGAAGACAAGCATATAACTACTAGCATCCTTGAACTGATCAAC
TTATAA
TCTCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGGGAGGAGAGTGGCGGGG
GGCAGTAGAGTGAAGGGCGGGGAATGCCCACAGTGAAGCAACTGAGGGGA
AATGTAATCCCCTGTAAGAGGCACTGCCAGGGAGGGCATAACCCATACCT
AACCCCGGTGGTGACACCGGGGGATTTACTGGAAGTTTTCTGCCACCACC
AGCCTGGAAGGAGCACTGTACAACAGATCAGAGAGAAGAGTTGGGCTGGA
GGGTGGATAGAGACAGGGGTGGGGGAGACAGGAGACTAGAGGGTCAAAGG
TGGTCTGTGTCTGTGCTTTGTTAGGGTAGTCCCCAGAAAACGAATACAGC
ACCCATGAATGCCCTCTTCCTAAGGTGGCTTCCATGAAGACCTGGCCTAA
CTGTCTCTACCCCTAATAGGACACTTTCCTCCTTGACAGTGGCCTGAACG
TAGTCATTTACCTGGACAATAGGATGTAGCGAAAATGAAGGGATTCTATT
GGCTAAGGCTGTGACATCCATGGTCGGCCATGTTTCATGCTGATTCTCCT
GCACCCTTTGATGAAATACGCTACAGGCTGGGCGGGGGTGGGACCCACCA
GAAGACTGCTGATAAATTCCCCTGTGTGGAACTGCACAAATCCTGGTGCG
TGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_p02.b1 MSMg01no108_p02.b1 CHROMAT_FILE:
MSMg01no108_p02.b1 PHD_FILE: MSMg01no108_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:57 2005
         (244 letters)



>mm_chr1_91056643_91057286
          Length = 644

 Score =  387 bits (200), Expect = e-112
 Identities = 233/244 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaagaacacacatgtgtatgtgtgtatatgtatgtgcatatatgtttgtatatgtaaac 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ccaagaatacacatgtgtatgtgtgtatatgtatgtgcatatatgtttgtagatgtaaac 260

                                                                       
Query: 61  atatacatgtatgtgtgcatatgtgtgttactgtaggcatggatgtgcacatgtgtttcc 120
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 atatgtatgtatgtgtgcatatgtgtgttactgtaggcatggatgtgcacatgtgtttct 320

                                                                       
Query: 121 agggtgtactcacctttgcctgcaagtggagtcctcaagtctagagcctctcgctctcta 180
           |||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 agggtgtattcacctttgcctacaagtggagtcctcaagtctagagcctttcgctctcta 380

                                                                       
Query: 181 tcatacctgtaatggctattcctggttgtcaacttgactatatctggaatgaactacaat 240
           |||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 381 tcatacttgtaatggctattcctggttgtcagcttgactatatctggaacgaactacaat 440

               
Query: 241 ccag 244
           ||||
Sbjct: 441 ccag 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no108_p02.g1 MSMg01no108_p02.g1 CHROMAT_FILE:
MSMg01no108_p02.g1 PHD_FILE: MSMg01no108_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:58 2005
         (440 letters)



>mm_chr1_91197412_91198251
          Length = 840

 Score =  812 bits (420), Expect = 0.0
 Identities = 435/440 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagggaggagagtggcggggggcagtagagtgaagggcggggaatgcccacagtgaag 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 640 tgtagggaggagagtggcggggggcagtagagtgaagggcagggaatgcccacagtgaag 581

                                                                       
Query: 61  caactgaggggaaatgtaatcccctgtaagaggcactgccagggagggcataacccatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 580 caactgaggggaaatgtaatcccctgtaagaggcactgccagggagggcgtaacccatac 521

                                                                       
Query: 121 ctaaccccggtggtgacaccgggggatttactggaagttttctgccaccaccagcctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctaaccccggtggtgacaccgggggatttactggaagttttctgccaccaccagcctgga 461

                                                                       
Query: 181 aggagcactgtacaacagatcagagagaagagttgggctggagggtggatagagacaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aggagcactgtacaacagatcagagagaagagttgggctggagggtggatagagacaggg 401

                                                                       
Query: 241 gtgggggagacaggagactagagggtcaaaggtggtctgtgtctgtgctttgttagggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtgggggagacaggagactagagggtcaaaggtggtctgtgtctgtgctttgttagggta 341

                                                                       
Query: 301 gtccccagaaaacgaatacagcacccatgaatgccctcttcctaaggtggcttccatgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtccccagaaaacgaatacagcacccatgaatgccctcttcctaaggtggcttccatgaa 281

                                                                       
Query: 361 gacctggcctaactgtctctacccctaataggacactttcctccttgacagtggcctgaa 420
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 280 gacctggcctaaccgtctctacccctaataggacactttcctccttgacaatggcctgaa 221

                               
Query: 421 cgtagtcatttacctggaca 440
           ||||| ||||||||||||||
Sbjct: 220 cgtagccatttacctggaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)