BAC Information

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BAC

Clone NameMSMg01-109K19
Chromosome1 (Build37)
Map Location 82,481,802 - 82,482,038
singlet/doubletsinglet
Overlap geneCol4a4
Upstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1
Downstream geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109K19.T7 (MSMg01no109_k19.b1)MSMg01-109K19.TJ (MSMg01no109_k19.g1)
ACCAG322800AG322801
length709700
length of high quality
(start - end)
435 (62 - 496)240 (85 - 324)
definitionCHROMAT_FILE: MSMg01no109_k19.b1 PHD_FILE: MSMg01no109_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:59 2005CHROMAT_FILE: MSMg01no109_k19.g1 PHD_FILE: MSMg01no109_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTTTTTTTNCCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCCTAAATTCCCAAAGAGTATTCCTAAAGAG
GCACTGAGGGCAAGTGAGCAGAGTAAAGTATAGAGAATAATATGGAAGAG
GAGTCCTTGCTGGGCTTTGGTGGCGCACACCTTTAGTCCTAGCACTCTGG
AGGCAGGCGGATTTCTGTGAGTTCAAGGCCAATGAGGACTACACAGAGAA
ACCCTGTCTTAAAAGTAAAATAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCTTGAGATTCCACCTCACATCAGTCAGAGTGGC
TAAGATAAAAAATTCAGGTGACAGCAGATGCTGGCTAGAATGTGGAGAAA
GAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTC
TGGAAGTCAATCTGGCGGCTCCTCAGAAAATTGGACATTGTTCTACCGGA
AGATCCAGCAATACCTCTCCTGGGCCTATATCCAGAAGATGCTCCAACTG
GTAATAATAACACATGCTCCACTATGTTCACAGCAGTCTTATTTATAATA
GTCAGAAGCTGGAAAGAACCCAGATGTCCCCTCACAGAGGAATGGATACA
GAAAATGTGGCACATTTACACAACGGAGTACTACTCTGCTATTAAAACAA
TCACTTTAT
CACTTTCTGNNTCTCGATGATGTGGGAGGCCTGGCGAACGCCTGTTTCAC
ACTAGGGNGNGACCTATAGAAGTACCAAAAACATCCTTAATTGAATGACT
GGTTCTTATGGAACATGGGGACACTCTCTAGAGATGTGGGTCTGGTCATT
TGTACCAGCTGCAATTTGAGATGCTTCGATCACGACATAGACGGCTTCTG
AAACATGCGTGGAGAGGAAGTCATGATATGTGTACGTATGCCAGATCCTA
TCTGGTACCTTTGACCTGTGTGGAAAATAAGAACTCTCTGAAGCTTCCGT
GTCTCACTGCCTAGAGTCTAACAGTCTTTTTTGAGTTCTAATTTGTGAAG
CAATTTATCATTAACATTATACTCACTCCCCCCGCTAGAATTCCTGGAAC
TCTGAATTTGCTAGCTGGGAACATTTTCCAAGCCATACCTTTAGGTCCTC
TTGCTCCATCATCTCCTGGGAATCCAGGGGGTCCTGGAGAACCTGGATCA
CCCTGACCATTAATGGACCAAAAATAAGACCCTCGTTGGGTTTTCCATGC
TGTGTTACAAAGACTTTACAGTTTTCTGCAGTCAAGTTAGTGTTTGTAAT
TGGCCATGGTGAATGAAACTGTTAGCGTCTTGTAACCCCTCTATTAACCA
TGTCTATGTTTTATGACCGGGTAATATTCCTCCACAATATACATGCTCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_k19.g1 MSMg01no109_k19.g1 CHROMAT_FILE:
MSMg01no109_k19.g1 PHD_FILE: MSMg01no109_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:59 2005
         (240 letters)



>mm_chr1_82481602_82482241
          Length = 640

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttaattgaatgactggttcttatggaacatggggacactctctagagatgtgggtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttaattgaatgactggttcttatggaacatggggacactctctagagatgtgggtctg 260

                                                                       
Query: 61  gtcatttgtaccagctgcaatttgagatgcttcgatcacgacatagacggcttctgaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcatttgtaccagctgcaatttgagatgcttcgatcacgacatagacggcttctgaaac 320

                                                                       
Query: 121 atgcgtggagaggaagtcatgatatgtgtacgtatgccagatcctatctggtacctttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcgtggagaggaagtcatgatatgtgtacgtatgccagatcctatctggtacctttga 380

                                                                    
Query: 181 cctgtgtggaaaataagaactctctgaagcttccgtgtctcactgcctagagtctaa 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtgtggaaaataagaactctctgaagcttccgtgtctcactgcctagagtctaa 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)