BAC Information

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BAC

Clone NameMSMg01-110F11
Chromosome1 (Build37)
Map Location 95,166,982 - 95,315,315
singlet/doubletdoublet
Overlap geneSned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik
Downstream geneSept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110F11.T7 (MSMg01no110_f11.b1)MSMg01-110F11.TJ (MSMg01no110_f11.g1)
ACCAG323292AG323293
length727776
length of high quality
(start - end)
242 (82 - 323)419 (132 - 550)
definitionCHROMAT_FILE: MSMg01no110_f11.b1 PHD_FILE: MSMg01no110_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:54 2005CHROMAT_FILE: MSMg01no110_f11.g1 PHD_FILE: MSMg01no110_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,315,074 - 95,315,315)(95,166,982 - 95,167,400)
sequence
GGCCACCACTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGTATAAT
CCGCGGAATTCACCTATGTCGCTTTACAGGCCCATACTTAAGATGCTTCT
GCTACAGCCTCTTATACTGGGATTGCAGGTGCTTGTCACCACATTCATTT
TTAAATAATGTAGTTTGCAAACATCTTTATCTAAGGAGTAACAGACTTTT
ATGGTGGTATTTGGTGAGACCAGTCCTTTAAAAAGAAAATTATCAAAAAT
AAGTTCTTCAGCCGGGCGTGATGGTGCACACCTTTAATCCCAGCAATCGG
GAGGCACAGGCAGGCGTATTTCTGATTTTGAGGCTAGCCTGGTCTACAAA
GTGAGTTCCAGGGCATTCTTTTCTATACTCAGCAACCCTGTCTCAAAAAA
CCAAAAATAATAATAAGTTCTTCAAATTACATACACGGATCTTTTCTTCT
TCCATATTCTTCATGCTGAGGATCAGGTGATGTCCAAGCGTAGTCAAGTT
TGGTCCTGCATGTTTCTCCATTTTCTCTAATGAGTGCCAGATTGAGTTTG
ACGTGCCCTGCTTTTGTTGTACCCTACTTGCTTGATGTGCAACTAGGACC
TTATGCTTTTGAGCCTAACGCCCTCTTCTCTTGTAATCTTTTATGCTGAT
GTTTCTCTCATTCCTTTATTGTTCAATTCTTTTTGCTCCCATTCTTTCTC
TTTCTGTCTTTTTACGCTCTTTCTTTG
CCCCCCCCCCCCCCCNTCTNCCCTTTCTTCCCCTTTTTCTTCCTTTTTTN
NNTNATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACCTAAAGTTACTATCA
CCTGCTGACATCCTCAAATGTGTCCAAAAAACATGAGCTAAAAGCCAATA
GATTACAAAACAAATAGGGCCATAATTTGGGGGAGATTTCAGTAATTCAT
AGAGCACACAGACAGAACTGGTTAAAGCTGGAAGACTTGCACCTAGCCTG
ATGGACATCTGAGGGGCATTCATTTTTCTTTCCCCTAGTATTCATGAAGT
GTCACTGTGACTGGCCATGGTGTGGGTCATAAAATAAAAACAGGTGACTT
AAAACCACAGCAGTTAAATTAGTAATCACTGAGAAATCTTAACTATTTAA
CCAACAGGAATGCTTGAACAATGATTCATTTACTTATTTTATGTATGTAC
ACTGTCACTCTCTTCAGACACACTATCAGAGAGCATCAGATCCCATTACA
GATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCACGAGCTCT
GTAAGAGCAGTCAGTGCTCTTAATCACTGAGCCATCTCTCCAGTCCCAGT
GCTGAATTTTGTGTACCCAAAAAGGAACCTGGTCCCAACCTTTTTCCCAC
AAGACCTGATTCTGATTTGTTTCAAATCAGATTCTGACCCACAACCCTTC
TTGGTATTGACAACAGCTGTGCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_f11.b1 MSMg01no110_f11.b1 CHROMAT_FILE:
MSMg01no110_f11.b1 PHD_FILE: MSMg01no110_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:54 2005
         (242 letters)



>mm_chr1_95314892_95315533
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatacttaagatgcttctgctacagcctcttatactgggattgcaggtgcttgtcacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ccatacttaagatgcttctgctacagcctcttatactgggattgcaggtgcttgtcacca 365

                                                                       
Query: 61  cattcatttttaaataatgtagtttgcaaacatctttatctaaggagtaacagactttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cattcatttttaaataatgtagtttgcaaacatctttatctaaggagtaacagactttta 305

                                                                       
Query: 121 tggtggtatttggtgagaccagtcctttaaaaagaaaattatcaaaaataagttcttcag 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 304 tggtggtatttggtgagaccagtcctttaaaaagaaaattatcgaaaataagttcttcag 245

                                                                       
Query: 181 ccgggcgtgatggtgcacacctttaatcccagcaatcgggaggcacaggcaggcgtattt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ccgggcgtggtggtgcacacctttaatcccagcaatcgggaggcacaggcaggcgtattt 185

             
Query: 241 ct 242
           ||
Sbjct: 184 ct 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no110_f11.g1 MSMg01no110_f11.g1 CHROMAT_FILE:
MSMg01no110_f11.g1 PHD_FILE: MSMg01no110_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:54 2005
         (419 letters)



>mm_chr1_95166782_95167600
          Length = 819

 Score =  787 bits (407), Expect = 0.0
 Identities = 416/419 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacctaaagttactatcacctgctgacatcctcaaatgtgtccaaaaaacatgagctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacctaaagttactatcacctgctgacatcctcaaatgtgtccaaaaaacatgagctaa 260

                                                                       
Query: 61  aagccaatagattacaaaacaaatagggccataatttgggggagatttcagtaattcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccaatagattacaaaacaaatagggccataatttgggggagatttcagtaattcata 320

                                                                       
Query: 121 gagcacacagacagaactggttaaagctggaagacttgcacctagcctgatggacatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcacacagacagaactggttaaagctggaagacttgcacctagcctgatggacatctg 380

                                                                       
Query: 181 aggggcattcatttttctttcccctagtattcatgaagtgtcactgtgactggccatggt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggcattcatttttctttcccctagtattcatgaagtgtcactgtgactggccatggt 440

                                                                       
Query: 241 gtgggtcataaaataaaaacaggtgacttaaaaccacagcagttaaattagtaatcactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgggtcataaaataaaaacaggtgacttaaaaccacagcagttaaattagtaatcactg 500

                                                                       
Query: 301 agaaatcttaactatttaaccaacaggaatgcttgaacaatgattcatttacttatttta 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 agaaatcttaactatttaaccaacaggaatgcttgaacaacgattcatttacttatttta 560

                                                                      
Query: 361 tgtatgtacactgtcactctcttcagacacactatcagagagcatcagatcccattaca 419
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 tgtatgtacactgtcactctcttcagacacactagcagagagcatcagatcccattaca 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)