BAC Information

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BAC

Clone NameMSMg01-110G18
Chromosome1 (Build37)
Map Location 67,728,009 - 67,728,338
singlet/doubletsinglet
Overlap genenone
Upstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
Downstream geneErbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110G18.T7 (MSMg01no110_g18.b1)MSMg01-110G18.TJ (MSMg01no110_g18.g1)
ACCAG323352AG323353
length741781
length of high quality
(start - end)
333 (56 - 388)---
definitionCHROMAT_FILE: MSMg01no110_g18.b1 PHD_FILE: MSMg01no110_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:00 2005CHROMAT_FILE: MSMg01no110_g18.g1 PHD_FILE: MSMg01no110_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCGCGNCCGATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCACATCCTGTCCAGAGCAAGCAGACACAGAAGACTC
ACCACATCTCTGAGGAGAACAGGCACATGCTACCCGGTAAGTTTTCCTTT
TCTGTTTCTGTCAACTTCTTTTAAGTCAAGAACTCTTAGCCTTAGGCAAT
TAGCTTCTTGAAATTCTATGTGTGATTTCATTTGTCTGAGGCAGTGTTTA
AAAGCATCACGAGGCAATAAAAGGTATTAAAAATAATAGTTTGAGATCAC
TCCAACCACACATCTCTCTTCAATATGGAATATAGATCACCCCCACCTTC
TCTCTGTCCCTCTCTCCATCTTACTTCCTTTCTTTCTCTTTCATATAACG
TCATAACATGTACTAAAACATCTCCCCCCACCCCCAATAAAGGTGTAATG
AACATTACAGATGAATGCAGTGTATTACATGACTCATTCTTACCTTCTAA
ACTTCACAAAACACTTCAGTTCTGTTCATCCCAACTGGCTATCTACTCTG
CTATGGTCTCAGTGACGCGCCTTTTGATCTCTTATTGTTTACTTCACACT
TAAAAAATGTCTAACTTCATCTCCCACCTGGCATATCCTGGTATACCTTT
AGTACTTTTCGTATGACTTCTCTGTATTTCTCTCTTTTCTTTTCATTTTT
TTTCTTTTTTCACCTTTCTTTTCTTATTTTTTTTCTTTTTA
CTCTTTTTTTTTTTTTTTCCTTTTTTTTTTTCGCTNNTTTCTCCTTCCCT
TTCCCAATTTTNTNACCGTTTNTCTCTCCCCCCTTTTCTTGTCCCCCTTT
TCCTCTCTGCTTGTTGTTTGTTGGTGGGGGGTGTGTAGTCTTCGGTTGTT
TCGCGGCGGGGTCTGCGTTCCCGCGCGCCCCCCGTTTCGCCCCCGCGATT
TTTCCCGGTTGTTGAGTGTCGGCGTTTTCCGGGCGGTCCCGGTGTCGCGC
CGCCTTTTTCCGGCGGTTCGCCGCGGCGTGCGGGCTTTCGCCGCTCTTTT
CTTTTTCCCGCCCTTTTCGCCCTCCATTTACTGTTGCCACAGGCTCCGGC
CGAATATTGCTGCCCGGTAGACCTGCCGCGGCTAGGACCTATTCCGTTGT
AAGAGGGGGGGGAGTGGAGCTGTCGGCAGTGTGGTGTGTTCACCCATATG
TATACTCCGTGGGCGGTGATCGGTGAGCCTAACGCGCGTCCCGCCGTTTT
GTCCGCCGCGTGTTTTCTGTGCTTCGGTTATGGCGCCGCGCGCGTCTCAG
GGCGGTATGGCGCCCTCATCGGGTTTATCCGGGGCGGGTGTCGAGCTTGT
ATTGTGCGCTTCGCGCCCTGTTATTCCGGCGCTCTTCGCCGAGGCGCTCC
GCGCGTTCGCTGTCGTGGCCCTATGCCGTTATTTTTGCTCCCGACCTCGT
GCGGTTCCCGTTCCGTCCGTTTTTCTGGCTTTCTCTTGCGCTCGTTGTTT
GTGATGGCTTCGCCCGCGGTATTTGGTGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_g18.b1 MSMg01no110_g18.b1 CHROMAT_FILE:
MSMg01no110_g18.b1 PHD_FILE: MSMg01no110_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:00 2005
         (333 letters)



>mm_chr1_67727805_67728538
          Length = 734

 Score =  574 bits (297), Expect = e-168
 Identities = 322/331 (97%), Gaps = 3/331 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatcc--tgtccagagcaagcagacacagaagactcaccacatctctgaggag 62
           ||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaattcacatccagggt-cagagcaagcagacacagaagactcaccacatctctgaggag 476

                                                                       
Query: 63  aacaggcacatgctacccggtaagttttccttttctgtttctgtcaacttcttttaagtc 122
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aacaggcacatgctagggggtaagttttccttttctgtttctgtcaacttcttttaagtc 416

                                                                       
Query: 123 aagaactcttagccttaggcaattagcttcttgaaattctatgtgtgatttcatttgtct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aagaactcttagccttaggcaattagcttcttgaaattctatgtgtgatttcatttgtct 356

                                                                       
Query: 183 gaggcagtgtttaaaagcatcacgaggcaataaaaggtattaaaaataatagtttgagat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gaggcagtgtttaaaagcatcacgaggcaataaaaggtattaaaaataatagtttgagat 296

                                                                       
Query: 243 cactccaaccacacatctctcttcaatatggaatatagatcacccccaccttctctctgt 302
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 295 cactccaaccacacatctctcttcaatatggaataaagaccacccccaccttctctctgt 236

                                          
Query: 303 ccctctctccatcttacttcctttctttctc 333
           |||||||||||||||||||||||||||||||
Sbjct: 235 ccctctctccatcttacttcctttctttctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 734
Length adjustment: 9
Effective length of query: 324
Effective length of database: 725
Effective search space:   234900
Effective search space used:   234900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)