Query= MSMg01no110_h01.b1 MSMg01no110_h01.b1 CHROMAT_FILE:
MSMg01no110_h01.b1 PHD_FILE: MSMg01no110_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:02 2005
(244 letters)
>mm_chr1_141108127_141108770
Length = 644
Score = 433 bits (224), Expect = e-126
Identities = 239/244 (97%)
Strand = Plus / Minus
Query: 1 atatacctgatggataataatgcttttagactttatatacttaataacactagtacactt 60
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 444 atatacctgatgaataataatgcttctagactttatatacttaataacactagtatactt 385
Query: 61 tacatactttataaataataagatatattttacatgtaatgaaatgtgttcatgttttcc 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 tacatactttataaataataagatatattatacatgtaatgaaatgtgttcatgttttcc 325
Query: 121 cataaataatattccagtctcctttgtaacattccagttataagaaaatgggaactccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cataaataatattccagtctcctttgtaacattccagttataagaaaatgggaactccta 265
Query: 181 tataatggttttgaaactctactgactgtctcaaagggaatataacagcactgcccttct 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tataatagttttgaaactctactgactgtctcaaagggaatataacagcactgcccttct 205
Query: 241 ccca 244
||||
Sbjct: 204 ccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no110_h01.g1 MSMg01no110_h01.g1 CHROMAT_FILE:
MSMg01no110_h01.g1 PHD_FILE: MSMg01no110_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:02 2005
(460 letters)
>mm_chr1_140995096_140995954
Length = 859
Score = 859 bits (444), Expect = 0.0
Identities = 457/462 (98%), Gaps = 3/462 (0%)
Strand = Plus / Plus
Query: 1 tgagttat--gttaattaagttttccaattacataggaagatgtacatttatttcatacc 58
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgagttatatgttaattaagttttccaattacataggaagatgtacatttatttcatacc 258
Query: 59 taaaggtagaagcttggaactaagtagaaaatgctatttcccagagcagatattacaaag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 taaaggtagaagcttggaactaagtagaaaatgctatttcccagagcagatattacaaag 318
Query: 119 ggttcagaagagacaccgtcagattatagattataaactgctaaaagctaattagcacca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggttcagaagagacaccgtcagattatagattataaactgctaaaagctaattagcacca 378
Query: 179 aagggcaatggtaaccagtgttgatttactgcagtgatctaaaggccagtgaacacagca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagggcaatggtaaccagtgttgatttactgcagtgatctaaaggccagtgaacacagca 438
Query: 239 aggctcaatatagtcagtttatattagattaattcacttctttctaaaatggatttttaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aggctcaatatagtcagtttatattagattaattcacttctttctaaaatggatttttaa 498
Query: 299 aacaatttcatttgatagactatttattgagcgtgagtatccacacatagaaatcttgaa 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 499 aacaatttcatttgatagactatttattgagcgttagtatccacacatagaaatcttgaa 558
Query: 359 ttcacctgtccctcagccccttggagctgcttagatctactgacaattgtggcaaaatag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttcacctgtccctcagccccttggagctgcttagatctactgacaattgtggcaaaatag 618
Query: 419 gacaaggaaagaaaaaaaaatctttgtgatgtacttgaaata 460
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 619 aacaaggaaagaaaaaaaa-tctttgtgatgtacttgaaata 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 859
Length adjustment: 10
Effective length of query: 450
Effective length of database: 849
Effective search space: 382050
Effective search space used: 382050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
