TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCCAATCAATAGGTTTTCAGGTTTCTCTGCTAAGGAGAATAATGCTG
TTTAAGTGATCTGTTTCCCTTCACGTTGAATCCCCATTATTGTCTAGTCA
TCTGAATGATGACCTTGTCTTTTGGAGATGGTTCACATCATTCTATTTTA
TGCTGTTTCATGAATAAAATAAATAAAAAGCAGTGGGATTTCCTTGAATA
TCTTTTTACGTATTTATCAGTAGGGGTAATCATTTCTCACCTTTCGACTT
TAAAATGATTGAATAAAAGGAGAAAATGCCGCTTATCATCTGTATGCTGA
CATTACGGGTAGCCGCTGGATTTATTCTAATTTGTGAAGGTGTGTAGAAT
AATAATTTCAGAACTGATGGGATGTATTCCAGATGGAAACCTGTTTCTAT
GGTAACACTGGGTACAGCGTTAACTAAAATTGCATATGAACAAGATGGTT
CCCTTTCTCTAGAAAACGCATGTTAAAAACAAGCAAAAAGGGGCCAAACT
TGATTGTGGTTCTTGATAAGTGATTATCTATGTGGGTTGGGTTAAATATC
CTTATAATCATCCGGCTTCCTAACCCATATGTGCTCTCTAAGGGTTACCT
TATTTTGGCCCATGTCCGATAATCTTTTTACCATGACCACCCGCAACCTT
GCTTACGAAATAAT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTCTCAGCACCTACATCAGGCAACTTA
TAACATCCTATAACTCTAGCTCCAGGGGCATCCAACACCAAGACCCCCAT
AGATGTGCACATGTGTCACATGTATATACACAGACACACACACACACTAC
TATAAATAAAGTAAATGGCTTTTTAAAACTGCTTTCAGACTCCATCTCCC
CCTAGTCAAAAAACTATCATCATGACAAATGACAAAAATTGATAATGATA
TGAGAAAAATGTAACTCTTATCTACAACTGGTGTAGATACAAACTGCTAC
AATGTCTATGGAAAGCTGAAAATAGAACTACCACGTTACTCAGCTGTATT
ACTCTTGAGTACATATCAAATGCATTCTAGCTCAGCATTCCACAAAGAGA
CTTGTACAACCATTACTTCACTATTCATAAGAGCTACGAAATGGAACCAG
CCTGGATGTTTTATCAATACATAAAGAAAAGATAGCATGTACCCACAAGG
AAGTTTTATTCATTCCATAAAGGAAAATGAAATCATGACATTTTCAGGAA
AGTGCATTTGACTAGAAATCATTCTATTAATAGAATGAAATAATCCAGAC
TCAGAAAGACAAATAGTACATATTTTTTCTCCATGGGGAGCTCTGTGAGT
GTGTGTGTGTGT

Query= MSMg01no110_h08.b1 MSMg01no110_h08.b1 CHROMAT_FILE:
MSMg01no110_h08.b1 PHD_FILE: MSMg01no110_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:03 2005
         (547 letters)



>mm_chr1_24164209_24165155
          Length = 947

 Score =  982 bits (508), Expect = 0.0
 Identities = 535/544 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttccaatcaataggttttcaggtttctctgctaaggagaataatgctgtttaa 63
           |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcttccaataaatagattttcaggtttctctgctaaggaaaataatgctgtttaa 263

                                                                       
Query: 64  gtgatctgtttcccttcacgttgaatccccattattgtctagtcatctgaatgatgacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgatctgtttcccttcacgttgaatccccattattgtctagtcatctgaatgatgacct 323

                                                                       
Query: 124 tgtcttttggagatggttcacatcattctattttatgctgtttcatgaataaaataaata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtcttttggagatggttcacatcattctattttatgctgtttcatgaataaaataaata 383

                                                                       
Query: 184 aaaagcagtgggatttccttgaatatctttttacgtatttatcagtaggggtaatcattt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaagcagtgggatttccttgaatatctttttacgtatttatcagtaggggtaatcattt 443

                                                                       
Query: 244 ctcacctttcgactttaaaatgattgaataaaaggagaaaatgccgcttatcatctgtat 303
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 444 ctcacctttcgactttaaaatgattgaataaaaggagaaaatgcggcttatcatctgtat 503

                                                                       
Query: 304 gctgacattacgggtagccgctggatttattctaatttgtgaaggtgtgtagaataataa 363
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gctcacattacgggtagccgctggatttattctaatttgtgaaggtgtgtagaataataa 563

                                                                       
Query: 364 tttcagaactgatgggatgtattccagatggaaacctgtttctatggtaacactgggtac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttcagaactgatgggatgtattccagatggaaacctgtttctatggtaacactgggtac 623

                                                                       
Query: 424 agcgttaactaaaattgcatatgaacaagatggttccctttctctagaaaacgcatgtta 483
           ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 624 agcattaactaaaattgcatatgaacaagatggttccctttctctagaaaatgcatgtta 683

                                                                       
Query: 484 aaaacaagcaaaaaggggccaaacttgattgtggttcttgataagtgattatctatgtgg 543
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 684 aaaacaagcaaaaaggggccaaacttgattctggttcttggtaagtgattatctatgtgg 743

               
Query: 544 gttg 547
           ||||
Sbjct: 744 gttg 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)