Query= MSMg01no110_k20.b1 MSMg01no110_k20.b1 CHROMAT_FILE:
MSMg01no110_k20.b1 PHD_FILE: MSMg01no110_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:20 2005
(688 letters)
>mm_chr1_70069711_70070795
Length = 1085
Score = 1295 bits (670), Expect = 0.0
Identities = 678/682 (99%), Gaps = 3/682 (0%)
Strand = Plus / Plus
Query: 7 ggaattcacacaaagggagcagagcatagttttaacaaataagccagactgtaaatgtgt 66
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcacacaaagggagaagagcatagttttaacaaataagccagactgtaaatgtgt 266
Query: 67 tggataagagaaatgagacagagacgaggagtgcttaaaaagaaggagacactatcactt 126
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 267 tggataagagaaatgagacagagacgaggagtgcttaaaaag---gagacactatcactt 323
Query: 127 tttaagtaaaatttgcatgagaacattattctgtgtgcttaatttgaaaagccctgaatc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttaagtaaaatttgcatgagaacattattctgtgtgcttaatttgaaaagccctgaatc 383
Query: 187 tatcagaccagctatggagtctgcgccgtgtatgattactaaagatactgatataagatt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatcagaccagctatggagtctgcgccgtgtatgattactaaagatactgatataagatt 443
Query: 247 gatagctctaggttaaatttacctactatgaagtaaaatttaatgtactagttatgtgta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatagctctaggttaaatttacctactatgaagtaaaatttaatgtactagttatgtgta 503
Query: 307 ttaattagtttcttattgctatgattaaaaagcccactggcatgagtccttgacactagg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaattagtttcttattgctatgattaaaaagcccactggcatgagtccttgacactagg 563
Query: 367 gaattttggcagtaggcagtaatcatggtggcaggaaatagttgagacatcacatgataa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattttggcagtaggcagtaatcatggtggcaggaaatagttgagacatcacatgataa 623
Query: 427 actatagcgggaaggagagggagaaaacttgaaacgacacacatgttttcttccagtgac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actatagcgggaaggagagggagaaaacttgaaacgacacacatgttttcttccagtgac 683
Query: 487 atacttctttcaacaaggccatacttctcacatagtgccatcattgggactaagtgttca 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atacttctttcaacaaggccatacttctcacatagtgccatcattgggactaagtgttca 743
Query: 547 gtgtcagaaacaatggggaattcaaagcacacatcatgaaaattctaatggagggaaact 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtgtcagaaacaatggggaattcaaagcacacatcatgaaaattctaatggagggaaact 803
Query: 607 tgcactgttattggatataaagatagatgggttttaccacacaaatacagggggagaagc 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgcactgttattggatataaagatagatgggttttaccacacaaatacagggggagaagc 863
Query: 667 cagtgttgtgtaggtcaatttg 688
||||||||||||||||||||||
Sbjct: 864 cagtgttgtgtaggtcaatttg 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1085
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1075
Effective search space: 728850
Effective search space used: 728850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_k20.g1 MSMg01no110_k20.g1 CHROMAT_FILE:
MSMg01no110_k20.g1 PHD_FILE: MSMg01no110_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:20 2005
(322 letters)
>mm_chr1_70215044_70215765
Length = 722
Score = 600 bits (310), Expect = e-176
Identities = 319/322 (99%)
Strand = Plus / Minus
Query: 1 aggaggataaatatttaatatataaagaaatacctacaaaaatttcatgggcatcttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aggaggataaatatttaatatataaagaaatacctacaaaaatttcatgggcatcttgtc 662
Query: 61 agtaatgaagcaaggctaggagtatgtcaatacactttcagtcccagcactcaaaggtag 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 661 agtaatgaagcaaggctaggagtatgtcaatatactttcagtcccagcactcaaaggtag 602
Query: 121 agacaacagggtactgaagatttgaggccagatgttcttcatattaagtcccagactagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agacaacagggtactgaagatttgaggccagatgttcttcatattaagtcccagactagg 542
Query: 181 caagccacgtacaagtaaggagaagataggaggaaatgttgaaagcactgaaagaagaca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 541 caagccacgtacaagtaaggagaagataggaggaaatgttgaaagcactgaaagaataca 482
Query: 241 cacctcaccactccacaccataccacagagtggggaggggtaaaggaaagggagagagag 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 481 cacctcaccactccacaccataccacagagtggggaggggtaagggaaagggagagagag 422
Query: 301 acatattattttgtgaggtaag 322
||||||||||||||||||||||
Sbjct: 421 acatattattttgtgaggtaag 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
