NNAATGGTATGGCNGGTCTATAATTGCGGCGCTAATACGACTCCTAATCA
GACGAGACCGCGGAATTCACTCTCTCACCTGAGAACAAGGCTTGTTTACT
AGTTAGGCACAGAGGAGGCCCACGCCATCTTATAACGGTGATTGCTCGCG
GCACACACGGCTCTCCTCAGAGATTACTGGCACGCACGCGATTGCTCACA
GCATGTACCGGCTCTCCACAATTTATTAGTTATAAAACATGCTAATTTTA
TATCTATAAGTTACACAATGTAAATGTTCCTTTTCTAATACTTGTCTTGG
GTGGAGTAAAGAGCATTTCTTTCTCTGTTGTTTCTTTACTAGGACTAGGC
CTAGAAGCTTCTAGCTTCCATAAAATCTAGTCTGCCAAGCTTACTTAATC
AATCCAGCTTCTCTTAGGTTCTGACTGATTTGCTCTGCTTGGTCTCATAC
TAACTTTGTCAATGTGTTGTAATCTTCAGGCTGCTTCTCACTCCCTTGCT
TGTTCCCCCTTCACCTGTATCTGGCTTGTTCTGTCTAATTTGTGTCTGTA
AAACTGTCAGAGCAAAACTGCCATAAACACACATCGCCACCCATGTCTAG
CTCTTTCTCTCTCCCTGAGGTGCAATTGTATACTCTCTTTTTTATGCTAT
TCTCATGAGATGTGAACAGATCCTATCTCATTCTGCCATGAAT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTTGCAATTTCCAAGTATCCTAAATTA
AAGTTCTTATTAACCTGTTTTCCGAAAAGCACACAAGGACTACTACCTCC
TGGTGTTAGTTAAAATCATCCTGCCTTAAATCAAAGGGCTGTGGTGATTT
GAATAGCCCATGGTCCATATGGACTTAGAAGTTTGAATACTTGGCCCATA
GGGAGTGGTGCTATTAGGAGATGTAGCTTTGCTGGAGAAAGCGTTTCACT
GTGGGGGTCTACTTGGAGGTTTCCTACCTTTAACCTATGCCCAGCATAGC
ACCCAGTCTTCTACTGCTTTCTGATCAAGATGTAGAACTCTCAGCTGCTC
TAGCACTAAGTCTACCTGGACGCTGCCATGCTTGCCGCCCTAATGACAAC
AAGTTAAATCGCAAAATTGTAAGTCAACCCCAATTAAATGTTTTCCTTTA
TAATAGTTGCCTTTGTCATGGTGTCTCTTCACAGCATTAAAACCCTAACA
AAGACAAGGGCTCTCTACAAATTCCATGCATCATAACTTACTTTTTCCAA
TATTGACCTTTACTCCACTTAATGTCCTGTACAAATATTCTTCACATCTC
TACTCATATTCTGCTGCTTTCCTC

Query= MSMg01no110_l23.g1 MSMg01no110_l23.g1 CHROMAT_FILE:
MSMg01no110_l23.g1 PHD_FILE: MSMg01no110_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:26 2005
         (603 letters)



>mm_chr1_29071306_29072308
          Length = 1003

 Score = 1122 bits (580), Expect = 0.0
 Identities = 598/604 (99%), Gaps = 1/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttgc-aatttccaagtatcctaaattaaagttcttattaacctgttttccgaaaagc 59
           ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 200 tctttgcaaatttccaagtatcctaaattaaaattcttattaacctgttttcagaaaagc 259

                                                                       
Query: 60  acacaaggactactacctcctggtgttagttaaaatcatcctgccttaaatcaaagggct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acacaaggactactacctcctggtgttagttaaaatcatcctgccttaaatcaaagggct 319

                                                                       
Query: 120 gtggtgatttgaatagcccatggtccatatggacttagaagtttgaatacttggcccata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtggtgatttgaatagcccatggtccatatggacttagaagtttgaatacttggcccata 379

                                                                       
Query: 180 gggagtggtgctattaggagatgtagctttgctggagaaagcgtttcactgtgggggtct 239
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 gggagtggtgctattaggagatgtagccttgctggagaaagcgtttcactgtgggggtct 439

                                                                       
Query: 240 acttggaggtttcctacctttaacctatgcccagcatagcacccagtcttctactgcttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acttggaggtttcctacctttaacctatgcccagcatagcacccagtcttctactgcttt 499

                                                                       
Query: 300 ctgatcaagatgtagaactctcagctgctctagcactaagtctacctggacgctgccatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgatcaagatgtagaactctcagctgctctagcactaagtctacctggacgctgccatg 559

                                                                       
Query: 360 cttgccgccctaatgacaacaagttaaatcgcaaaattgtaagtcaaccccaattaaatg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttgccgccctaatgacaacaagttaaatcgcaaaattgtaagtcaaccccaattaaatg 619

                                                                       
Query: 420 ttttcctttataatagttgcctttgtcatggtgtctcttcacagcattaaaaccctaaca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 620 ttttcctttataatagttgcctttgtcatggtgtctcttcacagcattaaaaccctatct 679

                                                                       
Query: 480 aagacaagggctctctacaaattccatgcatcataacttactttttccaatattgacctt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagacaagggctctctacaaattccatgcatcataacttactttttccaatattgacctt 739

                                                                       
Query: 540 tactccacttaatgtcctgtacaaatattcttcacatctctactcatattctgctgcttt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tactccacttaatgtcctgtacaaatattcttcacatctctactcatattctgctgcttt 799

               
Query: 600 cctc 603
           ||||
Sbjct: 800 cctc 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)