BAC Information

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BAC

Clone NameMSMg01-110N08
Chromosome1 (Build37)
Map Location 176,959,705 - 176,960,142
singlet/doubletsinglet
Overlap genenone
Upstream geneIfi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110N08.T7 (MSMg01no110_n08.b1)MSMg01-110N08.TJ (MSMg01no110_n08.g1)
ACCAG323657AG323658
length709710
length of high quality
(start - end)		442 (43 - 484)608 (73 - 680)
definitionCHROMAT_FILE: MSMg01no110_n08.b1 PHD_FILE: MSMg01no110_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:32 2005CHROMAT_FILE: MSMg01no110_n08.g1 PHD_FILE: MSMg01no110_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGGGAGGCCTGTTAGGACTGCTAATGCCTGGGCTTTTCCCTAAACTG
TAAGACACTACTACTTCCTTATTCACACTTAAAGGAACTGAAGAGCCTCA
GAGAAGCGGGAGTGGTTGGACAGTGTTGGGGAACCAGCACTGTTTCTTCT
CCAGTCTCTGATCCCAGCTTTCTCATTCCACTGCAAGCTGTTCTACTATG
GTCGCCTGTTATCTATTTATTGAATTATCTGGAATACAATTCTTTTAAAA
TGATATACAGAGGCTCGGAAGATGGCTTGGTGATTAAGAACTATGGTTAC
TCTTCCAGATGAACCAACTACAATTAGAATTCCAGCCAGCTCCAGGGAAT
CTGGAAATCAGTGAACACACCCATTCTCTCTCTCTTTCTCTTTCTCTCTC
TCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACCA
GAGATAATTAAAGCAAATAATAAACTAATCTTTAAAAACAGAAGTATATA
TAAGAACCCCCTCCAACACACACACACATACACACACTCATACACACACA
TATATATACACACACATACACGCACACACATCTTTTGGAAAAGTAACTCG
TTCCTTATTTCTGTGCTTTTTAAAAAATCTAAACATTCTTCAGAGTATGT
GGACAGATT

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTTAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGAAGGATCCAGT
AATACCTCTTCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGCGG
ATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACCATTTCCTAC
ACACATGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_n08.b1 MSMg01no110_n08.b1 CHROMAT_FILE:
MSMg01no110_n08.b1 PHD_FILE: MSMg01no110_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:32 2005
         (442 letters)



>mm_chr1_176959676_176960517
          Length = 842

 Score =  847 bits (438), Expect = 0.0
 Identities = 438/438 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgggaggcctgttaggactgctaatgcctgggcttttccctaaactgtaagac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaattcctgggaggcctgttaggactgctaatgcctgggcttttccctaaactgtaagac 408

                                                                       
Query: 65  actactacttccttattcacacttaaaggaactgaagagcctcagagaagcgggagtggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 actactacttccttattcacacttaaaggaactgaagagcctcagagaagcgggagtggt 348

                                                                       
Query: 125 tggacagtgttggggaaccagcactgtttcttctccagtctctgatcccagctttctcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tggacagtgttggggaaccagcactgtttcttctccagtctctgatcccagctttctcat 288

                                                                       
Query: 185 tccactgcaagctgttctactatggtcgcctgttatctatttattgaattatctggaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tccactgcaagctgttctactatggtcgcctgttatctatttattgaattatctggaata 228

                                                                       
Query: 245 caattcttttaaaatgatatacagaggctcggaagatggcttggtgattaagaactatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 caattcttttaaaatgatatacagaggctcggaagatggcttggtgattaagaactatgg 168

                                                                       
Query: 305 ttactcttccagatgaaccaactacaattagaattccagccagctccagggaatctggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ttactcttccagatgaaccaactacaattagaattccagccagctccagggaatctggaa 108

                                                                       
Query: 365 atcagtgaacacacccattctctctctctttctctttctctctctctctctctctctctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 atcagtgaacacacccattctctctctctttctctttctctctctctctctctctctctc 48

                             
Query: 425 tctcacacacacacacac 442
           ||||||||||||||||||
Sbjct: 47  tctcacacacacacacac 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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