BAC Information

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BAC

Clone NameMSMg01-110O21
Chromosome1 (Build37)
Map Location 77,810,051 - 77,981,920
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110O21.T7 (MSMg01no110_o21.b1)MSMg01-110O21.TJ (MSMg01no110_o21.g1)
ACCAG323730AG323731
length720781
length of high quality
(start - end)		671 (45 - 715)193 (90 - 282)
definitionCHROMAT_FILE: MSMg01no110_o21.b1 PHD_FILE: MSMg01no110_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:40 2005CHROMAT_FILE: MSMg01no110_o21.g1 PHD_FILE: MSMg01no110_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,981,254 - 77,981,920)(77,810,051 - 77,810,240)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATACAAACTCACAAATCACAAACGACAGGAGGAGAACGAATGCT
TAAGATCCGGACATCCGAGGATGTTCAAAAGGAATGGAAAAACAAGAGCC
ATCAAACGTGCCACGGCTATGAGGTCAACCCCTTGAAGTCGACTTTAGGA
AAAGCCTTGATCCCTGAGCCCTGGACAGATGCTGTGACTACTTCCACTTC
CTTCGGGACAAACAATTAACATCCAAGCGTCTCTTGTTCTGCATCCAATC
AGAACCACCTGAAGGATTTAAACTATCATGGAGCACAGTGCTGTGGAGCT
GCTGGCTGGCTGGAGGGGTCTCATAAATGTCACCGGGAGGACTCCTAGCA
ATCGGGAAGACAAGAGACAAAAATAATAACCGTAATTCTTTACTCTCACA
TAGCATCTTTCATCTGAAGGGCTCAAAGGCTCAACGTATTTTACAGATGT
TGTAGCCATTAAAATGTATACGGCAGACATTATTCTCCGTGGATTACAGA
TGGGGAGGGGACCGTAATCCTGTCACTCAGACTAAAACTGGAATAAACAT
CTAATTATCCCTGAGAGGAATTCTTTCTAAATGCAGCCCCCTCTTTATGC
AGTTTCTTATCGCTTCTGAGTGGACAAGACAGGTCTCCTCGTTGGGCCTG
GTATATCTGCTGCCAGCATC

NACACCACCNNNCACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGCCAGTG
GTAGCCTATGAGATGATGAAAAGAAGATGGGCAAATGATGGAGAGAGCCC
AGAGGGAGGGTCCAAATGGGAAACAGTGGTGTTTGATTGTCATAGTGACA
GTGATGAGACACAGGGAAATTCCACGTCTGGAATTGTTGCTGAGAAACTG
ACAGTCAGTAGTGTGGGGGTGGGGAGTTGNNNNNNNTNNNTNTTCTTCCC
TCTCTTCTTTCTCTCTTCCCTTTTCATCTCTTCTCCTTTTTTTTTTTTCT
TCATTCCTCTCCCCCCTCCTTCTTCTTTTCTCTCCTTCACCCCTATCCCT
TTTTCTTTTCTCTTTTTCTTTTTCTTCTTTTTCCCCCCCCCCCTTTTTAA
TACATTTACATATCTTTCTTTTTGATTTGTTTCATTTACTTTTTCTTGTT
TCCTTTATTTATTTCATTTCTTTTCCTACCCTTCTCCTTCACACACCATT
TCCTATCTTTTTATTTTTTTCTTTCCCTCGTCTTTTTTCTCCTTCTTCCT
TTTTTTTATTTTTATCTTCACTCCATTTTTTCCCTTTCTTTATTTCTTTT
TCGCCCATTATTTTTTGCGTATCCTTTTATTTTTCTTATTCTTCGTCTTC
TCTTGCTTGCTTTTCTAATTTATTACCTTCTTTCCCTTCAGCAATATTTA
GCCTCTTCGCTCGATTGTAATCTATCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_o21.b1 MSMg01no110_o21.b1 CHROMAT_FILE:
MSMg01no110_o21.b1 PHD_FILE: MSMg01no110_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:40 2005
         (671 letters)



>mm_chr1_77981050_77982120
          Length = 1071

 Score = 1212 bits (627), Expect = 0.0
 Identities = 657/667 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaatacaaactcacaaatcacaaacgacaggaggagaacgaatgcttaagatcc 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gaattcaaatacaaactcataaatcacaaacgacaggaggagaacgaatgcttaagatcc 812

                                                                       
Query: 65  ggacatccgaggatgttcaaaaggaatggaaaaacaagagccatcaaacgtgccacggct 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 811 ggacatccgaggatgttcaaaaggaatggaaaaacaagagccatcaaacgcgccacggct 752

                                                                       
Query: 125 atgaggtcaaccccttgaagtcgactttaggaaaagccttgatccctgagccctggacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 atgaggtcaaccccttgaagtcgactttaggaaaagccttgatccctgagccctggacag 692

                                                                       
Query: 185 atgctgtgactacttccacttccttcgggacaaacaattaacatccaagcgtctcttgtt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 691 atgctgtgactacttccacttccttcgggacaaacaattaacatccaagcatctcttgtt 632

                                                                       
Query: 245 ctgcatccaatcagaaccacctgaaggatttaaactatcatggagcacagtgctgtggag 304
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 631 ctgcatccaatcagaaccacctaaaggatttaaactatcatggagcacagtgctgtggag 572

                                                                       
Query: 305 ctgctggctggctggaggggtctcataaatgtcaccgggaggactcctagcaatcgggaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ctgctggctggctggaggggtctcataaatgtcaccgggaggactcctagcaatcgggaa 512

                                                                       
Query: 365 gacaagagacaaaaataataaccgtaattctttactctcacatagcatctttcatctgaa 424
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 511 gacaagagacaaaaataataacagtaattctttactctcacatagcatctttcatctgaa 452

                                                                       
Query: 425 gggctcaaaggctcaacgtattttacagatgttgtagccattaaaatgtatacggcagac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 451 gggctcaaaggctcaacgtattttacagatgttgtagccattaaaatgtatacagcagac 392

                                                                       
Query: 485 attattctccgtggattacagatggggaggggaccgtaatcctgtcactcagactaaaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attattctccgtggattacagatggggaggggaccgtaatcctgtcactcagactaaaac 332

                                                                       
Query: 545 tggaataaacatctaattatccctgagaggaattctttctaaatgcagccccctctttat 604
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 331 tggaataaacatctaattatccttgagaggaattctttctaaatgcagccccctcttttt 272

                                                                       
Query: 605 gcagtttcttatcgcttctgagtggacaagacaggtctcctcgttgggcctggtatatct 664
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 271 gcagtttcttatcgcttctgagtggacaagacaggtctcttcattgggcctggtatatct 212

                  
Query: 665 gctgcca 671
           |||||||
Sbjct: 211 gctgcca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no110_o21.g1 MSMg01no110_o21.g1 CHROMAT_FILE:
MSMg01no110_o21.g1 PHD_FILE: MSMg01no110_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:40 2005
         (193 letters)



>mm_chr1_77809851_77810443
          Length = 593

 Score =  368 bits (190), Expect = e-106
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgccagtggtagcctatgagatgatgaaaagaagatgggcaaatgatggagagagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgccagtggtagcctatgagatgatgaaaagaagatgggcaaatgatggagagagcc 260

                                                                       
Query: 61  cagagggagggtccaaatgggaaacagtggtgtttgattgtcatagtgacagtgatgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagggagggtccaaatgggaaacagtggtgtttgattgtcatagtgacagtgatgaga 320

                                                                       
Query: 121 cacagggaaattccacgtctggaattgttgctgagaaactgacagtcagtagtgtggggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagggaaattccacgtctggaattgttgctgagaaactgacagtcagtagtgtggggg 380

                     
Query: 181 tggggagttg 190
           ||||||||||
Sbjct: 381 tggggagttg 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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