BAC Information

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BAC

Clone NameMSMg01-111A13
Chromosome1 (Build37)
Map Location 50,281,147 - 50,281,445
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666924, C230029F24Rik, LOC627430, LOC100041981, EG666962, EG666970
Downstream geneLOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111A13.T7 (MSMg01no111_a13.b1)MSMg01-111A13.TJ (MSMg01no111_a13.g1)
ACCAG323806AG323807
length1,1921,162
length of high quality
(start - end)		729 (86 - 814)689 (90 - 778)
definitionCHROMAT_FILE: MSMg01no111_a13.b1 PHD_FILE: MSMg01no111_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:50 2005CHROMAT_FILE: MSMg01no111_a13.g1 PHD_FILE: MSMg01no111_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCATTTNNNAAAACATTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATCAACATAATCCACTCTTTAAACAAACTCAAAATAAA
AAACCTCATGATTATCTTCCTAGACTCAGGAAAGCATTTGAGAAAATCCA
ACACCCATTCATGATAAAAAGTCTTAGAAAGATCAGGAATTCAAGGCCTA
TAACTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAA
AGTAAATGGTGAGAAGCTGGAAGCAATCTCACTAAAATCAGTGACTAGAC
AAGGCTGCCCACTTTCTCCCTACCTATTCAACATTGTACTTGAAGTCCTA
GCCCGAGCAATTTGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAA
GGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAA
GTGACCCTAAAAATTCCACCAGAGAACTCTTAAACCTGATAAACAGCTTC
GGTGAAGTAGCTGGATATAAAATTAACTCAAAGAAGTCAATGGCCTTTCC
TACACAAAGGATAAAAAGGCTGAGGAAGAAATTAGGGAAACAACAAACTT
CTCAATAGTCACAAATAATATAAAATACCTTAGCTTGACTCTAACTAAGG
AAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATT
AAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCACAGGTTGGCAG
GATCAACATTGTAAAGTAGGCTATCTTGCCAAAAGCAATCCACAGATTCA
ATGCAATCCCCATCAAAATTCCAACTCAATTCTTCCACAAATTAGGAAAA
GCAATCTGTAAATTCATCTGTAATAACAAAAAACGTAGGATAGCAAAAAC
TCTTCTCAAGGATAAAAGATCCTCTGGTGGAATCAACATGCCTGACCTAA
AGCTGTACTACAGAGCAATTATGATAAAAACTGCATTGGACCTGGTATAG
CTACAGAACAGTAGAACCAATAAAATAAGCATTGAAAGACCCAAAAATGA
ACCCACCCCCCCTAAGGGCACTTTGATCTTTTGACAAGGGGAGTTAAAAC
CCTCCCCGGGGAAAAAAGGAACGCCTTTTTTCAAAAAATGGGGGCTGGCC
CAACCGTGTGTTTTATCTTGTTANAAAATTGTGAAATTGGTT

CCGCTCTTTTNNNNAACCACGTGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTATAAGTTCCGTTCTGAGCCAC
ATTTTTTAATGGGGTTACTTTATTTTCTGAAGTCCACCTTCTTGAGTTCT
TTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGAT
CCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTG
CCTTGCAGAAACTTTGGCGTTTCATTAGGTCCCATTTGTCAATTCTCGAT
CTTACAGCACATGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCC
CATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCT
CTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAA
GGAGATAAGTATGGATCGATTCACATTCTCTGAATACATAAATCAAATTG
CTTATAGTTGCAGTGTCTTTTTCTCCCCAATTAAATTTGTGTTAGTTAAA
AAATTCTGTTTTCTTCCAGCAGTCATAAATCACTCATGAATTTGTCTTCT
TCAGGACCCACATTCATTCTGCAATAAAGTCTGAGACTAGCTGAATGACA
CCCTGTATTCCTGGAAATTGTTCTTTTCTATGAGAGACCAAAAAGGAATG
GACATGGCAGGAAAGTAAAAAGAAACTGGGAAGAGTAGAGGGTTGAAAAA
CTATAATCAAATATATTGTAAGAAAAAACTCTATTTTTCATAAATGAAAA
TAGGTCGAAAGAAAGAACTGANAAATAATATAGTTGATCATGTTCCACAC
TCCCCACCCTGTCTGCTTTCCCACAGAGTTCCCTCCCTTCCTTCCCCCTT
GTGATTGCTATCTTCTCCTTCCCAAGTGGGGATGAAGCATCCTCACTTGG
GCCCTTCAGCTTGTTGACCTTTTTGAGTTCTGTACACTGGATCTTGGAAA
TTCTGAACCCTTTTTTTTTTTTTTTTTTTTTTCTGGGCAACATCCCCCTT
TTTAAAAGTGTCCCCCCCTGTTCCTTTTTGAACCCAAGTTTCCTCCCCTC
GGAAGGAATTTTTCTAGTTCCCCCCCCTTTTCCCCCAAAAACTAAAGGAA
GGCCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_a13.g1 MSMg01no111_a13.g1 CHROMAT_FILE:
MSMg01no111_a13.g1 PHD_FILE: MSMg01no111_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:50 2005
         (689 letters)



>mm_chr1_50280557_50281645
          Length = 1089

 Score =  547 bits (283), Expect = e-160
 Identities = 295/299 (98%)
 Strand = Plus / Plus

                                                                       
Query: 391 ctgaatacataaatcaaattgcttatagttgcagtgtctttttctccccaattaaatttg 450
           |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 591 ctgaatacataaatcaaattgcttatggttgtagtgtctttttctccccaattaaatttg 650

                                                                       
Query: 451 tgttagttaaaaaattctgttttcttccagcagtcataaatcactcatgaatttgtcttc 510
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 651 tgttagttaaaaaattctgttttcttccagcagtcataagtcactcatgaatttgtcttc 710

                                                                       
Query: 511 ttcaggacccacattcattctgcaataaagtctgagactagctgaatgacaccctgtatt 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ttcaggacccacattcattctgcaataaagtctgagactagctgaatgacaccctgtatt 770

                                                                       
Query: 571 cctggaaattgttcttttctatgagagaccaaaaaggaatggacatggcaggaaagtaaa 630
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 771 cctggaaattgttcttttctatgagagacaaaaaaggaatggacatggcaggaaagtaaa 830

                                                                      
Query: 631 aagaaactgggaagagtagagggttgaaaaactataatcaaatatattgtaagaaaaaa 689
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 aagaaactgggaagagtagagggttgaaaaactataatcaaatatattgtaagaaaaaa 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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