Query= MSMg01no111_e04.b1 MSMg01no111_e04.b1 CHROMAT_FILE:
MSMg01no111_e04.b1 PHD_FILE: MSMg01no111_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:21 2005
(602 letters)
>mm_chr1_116299288_116300289
Length = 1002
Score = 928 bits (480), Expect = 0.0
Identities = 570/608 (93%), Gaps = 21/608 (3%)
Strand = Plus / Plus
Query: 1 gaaaatatatgagaaaagttggtgctggggcactctgtatcccaaggcccattatgaaat 60
||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 208 gaaaatatatgagaaaagttggtgctggggcactccgtat-------cccattatgaaat 260
Query: 61 accacatggaagacaaagtattgagagcaaaaattaatggatttagatgaaaatatcata 120
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 261 accacatggaagacaacgtattcagagcaaaatttaatggatttagatgaaaatatcata 320
Query: 121 aatgtcaaaattagagaggctgaaatacctagaggcttcaaataaatacaaggagcagga 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aatttcaaaattagagaggctgaaatacctagaggcttcaaataaatacaaggagca-ga 379
Query: 181 -atttggacagtttcttggatcagatacccactctttatttc-ttctctctctctctctc 238
|||||||||||||||||||||||||||||||||| |||||| |||| | | ||||||||
Sbjct: 380 tatttggacagtttcttggatcagatacccactctctatttctttct-tgt-tctctctc 437
Query: 239 tctctctctctctctctctctctctctctctctctctctctctctctctccactctttgt 298
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 438 tctctctctctctctctctctctctctctctctctctctctctctctctccaatctttgt 497
Query: 299 gtgtagcattgtacaaatcggg----tttttatacaaaaatgtatttgtgcttctaagag 354
|||||||||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 498 gtgtagcattgtacaaatggggggca----tatgcaaaaatgtatttgtgcttctaagag 553
Query: 355 cctgtgaacatgagtatggaggccagagattcatacctgatgtgttcattgattgttctc 414
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tctgtgaaaatgagtatagaggccagagattcatacctgatgtgttcattgattgttctc 613
Query: 415 caacttagtaagtaaagaaggatcacttattgaacattttctcactgaagggttgtttta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 caacttagtaagtaaagaaggatcacttattgaacattttctcactgaagggttgtttta 673
Query: 475 tattgaactgtattatttaacatatggtatcttgctggaccttcaattatttaaagcaga 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tattgaactgtattatttaacatatggtatcttgctggaccttcaattatttaaagcaga 733
Query: 535 atccctcattgaaacttcttttttttagatatttttttattacatattttcctcaattac 594
||||||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct: 734 atccctcattgaatcttcttttttaaaaatatttttt-attacatattttcctcaattac 792
Query: 595 atttccaa 602
||||||||
Sbjct: 793 atttccaa 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 39
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_e04.g1 MSMg01no111_e04.g1 CHROMAT_FILE:
MSMg01no111_e04.g1 PHD_FILE: MSMg01no111_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:21 2005
(795 letters)
>mm_chr1_116373772_116374966
Length = 1195
Score = 878 bits (454), Expect = 0.0
Identities = 463/466 (99%)
Strand = Plus / Minus
Query: 5 tgactttcattcttaccagaaatatgtatgttaaaagatagtggtacaaaatatattact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 466 tgactttcattcttaccagaaatatgtatgttaaaagatagtggtacaaaatacattact 407
Query: 65 taccttaaaataataatttagccatttctaaatcataaaaataaatgaataaatcaagta 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 406 taccttaaaataataatttagccatttctaagtcataaaaataaatgaataaatcaagta 347
Query: 125 agatttagcaacaaagagctcatcatccaaagtcaatatgcttttttatgttcttttaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agatttagcaacaaagagctcatcatccaaagtcaatatgcttttttatgttcttttaat 287
Query: 185 ttacttatgatatgagtaagaaattatgatgcataatcatatatcaaatatatacattac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 286 ttacttatgatatgagtaagaaattatgatgcataatcatatatcaaatatatgcattac 227
Query: 245 aactttgggaagtaggtgattttcctaatttaattttgttattgtgacaaaacactgtga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 aactttgggaagtaggtgattttcctaatttaattttgttattgtgacaaaacactgtga 167
Query: 305 acaacagcaacttggaaatggaaatgtttattttatcttacactgtgggtcacaatctat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 acaacagcaacttggaaatggaaatgtttattttatcttacactgtgggtcacaatctat 107
Query: 365 cattgagtgaagacagggcaaaatcctatattcaataacactaaaaaatcttcataattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 cattgagtgaagacagggcaaaatcctatattcaataacactaaaaaatcttcataattt 47
Query: 425 tccaaacatataccaggtaccaaagttaaatcacgatcagataaac 470
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 tccaaacatataccaggtaccaaagttaaatcacgatcagataaac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 795
Length of database: 1195
Length adjustment: 10
Effective length of query: 785
Effective length of database: 1185
Effective search space: 930225
Effective search space used: 930225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
