BAC Information

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BAC

Clone NameMSMg01-111J08
Chromosome1 (Build37)
Map Location 76,530,753 - 76,531,314
singlet/doubletsinglet
Overlap genenone
Upstream geneStk11ip, Slc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111J08.T7 (MSMg01no111_j08.b1)MSMg01-111J08.TJ (MSMg01no111_j08.g1)
ACCAG324216AG324217
length1,1701,206
length of high quality
(start - end)
664 (75 - 738)559 (75 - 633)
definitionCHROMAT_FILE: MSMg01no111_j08.b1 PHD_FILE: MSMg01no111_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:06 2005CHROMAT_FILE: MSMg01no111_j08.g1 PHD_FILE: MSMg01no111_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATTATTGCGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCCT
ATACTGTATTTTCTTTATATTCACTCCACCCTACTCTCACCTTACCTCCT
CCCATATCCACCCCTCACCTGTCTATATACTCTCGTCTGTGGCGCTATCT
ATCCACTGCATGTGGTCAACCTACTAAGGGCCACATGCTTAAAAAACCTT
CCTCCCCCTCTCACAGAAGCCATCAATTTCAATAGTTCCTTATCTGAGGG
GAGGGTCCCCCTAAAGCCCATCCATGCTAGAATGTTGACTGGCCTGATCT
TGTGCATATCTTGTGCAGGCTACCACAGCTCCTGTGTGCTCACAGGTGTC
AGCTTTTCATGTCCAGAAGATAGAGTGTCACTCAGGTCTTCCCTGACAGC
TGCTCTTAAAGTCTTTCCACTCTCCCTCCCACAATGCATCTTAAGCCTTG
GGGAATGTGACATAGATGTCCTGCTTATGGCTGAGCACTGTCCTGACATC
TATTCTCTGCACTTTGACTAGGGATGAGTTTCAGTGTTAATCATCACCCA
CTGTTCAAAGAATCTTCTCTAAGAAAGCCTGAGTGCTTCACTAAGCCGAA
AGTATAAAGATATAAATTTAAAGGACAGCTTGATACTTTGTCCATTAAGC
AGAATAATAGTAGCACTTTTTTTTTTATCCTGGGAGTCTGTGAGCTCCTC
AGCTGTTGGTTCTTAGATTGCAGTACCAGACTTGTGCCTCCTGCAAAGCA
GGCCTCTAGGTCCAACCAGAAAGCAGGAGGTTATCCCCAAATCATTTGTG
CCACTACTTCACTCATGGACCACACAGCAGCTGCAGGAACTGTGAAAGCT
ATGCAGCACAAAAAAAGCTTCCCAGTCAAAACTTACTTGATTCCTCTGTC
TGATGACCAAAGAGGGTGTCAACTTCCGCAATAAATAATCCCACTCATGG
ATTTGTGTGAAACCAGAAACAATGGAAAACATTTATTCCCTAACCCTTGG
ACTCAATTATAATTTTTCCGGTTTAATAATCATCCTCTGGACAAAAAATC
TTCCTTTAAAAAAGCCCGAAGGGCTTCCCCTTATCCCCTGGAGTTATATA
AAATTTATTTTATAAAGAAAGGGGTGTGAAACTATGTCCCCTTTTACAAA
AAATAAAGTGTTCCCTCTTC
CCCCGCCGACTGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCCTTAATGGTTTCGTGCCTCAACTGTACATCTGTC
TAGGCTTGTGTTTGCTTAAGTCTGGTTGGTTTTCTGATCTTGAGAAAGGA
ATGTTCCAGTTATCTCTAAGGTTGACTCCACAGTGCCTGGATTTCTTTTC
TTGTTAGGATGCTATGTGATTTCTCCCTTTGATGTTTTGGCAAATGAAGG
TGGATTGAAGAGAAAGGATGGTGGGTTCAGTCAGATAGAGTTTTTGGTCT
TCACATGCTGTCAAGGAGATGCATGGGTGCTATGACCCAGAACCCACTGC
ATAGCCAGTGACCTCGAGACTGCCCTACTGCTGAATCCACATGCTAGAGA
TTTCTTTCTAAGACAATAGACATTTTAGTTAAATCAGGAACTGATGATGT
TAGCATTCTGTGCTGGCTAGATTATGTCAACTTGATACAAACTATAATCA
TCTGAACGAAGGAAAACCTGATTGAGAAAATGTCTCCATAAGATCGGGCT
GGGTGTTTTCTTAAGTAGTGATTGATGGGGGGAGTGCCCAGTCCATTGTG
AGCCGATGGTCCTGGGTTCTATAAGAAAGCAGGCTGAGCAAGCCATGATG
AGGCTAGAAGGCTATGCCTACGAGTGGGGTCTGAGCAGTCCAAGGTATAT
AAACTGTGAGACCGTGTGCAAATTGAAGAGAGGGGCTTTTTAATTGAAAA
TGTTTCTAAATCATTTCAAGACCATAAGAGCAGAGCTTTGATTCATGATA
AGCCCCTTGGGACTGTTTTAATCCACTATTCCCTGGAGTCCAGCCCTGGC
CTTTGTAACACTTAACAAAACAAAGCGGCTTAACCAAATTGTGAATCCAC
ATCTTGTTTTCTGCCTTTTTAACCATTCTTGTTAATTTTTGGTAAGACTT
TTTTTCCCATACTTTGTAATTCCAAGGTGTCCTTTTGCTTTATTGTTTAT
GAATTTTCCCCAAATTTTTATAATCTTCCACTTTATATATCTATTTCCTC
GTTCTATTGTGTACTTATTAATTCCCTTCTGTATATATTTTTATACAATG
GGCTAACTTTCTCTCATTTATACACTTCTCTTATTTCTCTTTGATATTTT
TATATTCTTCATATTTNGTTTTATTTTTTTCTCTGTTTACCTTATCTCTC
TCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_j08.g1 MSMg01no111_j08.g1 CHROMAT_FILE:
MSMg01no111_j08.g1 PHD_FILE: MSMg01no111_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:06 2005
         (559 letters)



>mm_chr1_76530553_76531511
          Length = 959

 Score = 1060 bits (548), Expect = 0.0
 Identities = 558/562 (99%), Gaps = 3/562 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcgtgcctcaactgtacatctgtctaggcttgtgtttgcttaagtctggttggttttc 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcgtgcctcgactgtacatctgtctaggcttgtgtttgcttaagtctggttggttttc 260

                                                                       
Query: 61  tgatcttgagaaaggaatgttccagttatctctaaggttgactccacagtgcctggattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatcttgagaaaggaatgttccagttatctctaaggttgactccacagtgcctggattt 320

                                                                       
Query: 121 cttttcttgttaggatgctatgtgatttctccctttgatgttttggcaaatgaaggtgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttcttgttaggatgctatgtgatttctccctttgatgttttggcaaatgaaggtgga 380

                                                                       
Query: 181 ttgaagagaaaggatggtgggttcagtcagatagagtttttggtcttcacatgctgtcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaagagaaaggatggtgggttcagtcagatagagtttttggtcttcacatgctgtcaa 440

                                                                       
Query: 241 ggagatgcatgggtgctatgacccagaacccactgcatagccagtgacctcgagactgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagatgcatgggtgctatgacccagaacccactgcatagccagtgacctcgagactgcc 500

                                                                       
Query: 301 ctactgctgaatccacatgctagagatttctttctaagacaatagacattttagttaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctactgctgaatccacatgctagagatttctttctaagacaatagacattttagttaaat 560

                                                                       
Query: 361 caggaactgatgatgttagcattctgtgctggctagattatgtcaacttgatacaaacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggaactgatgatgttagcattctgtgctggctagattatgtcaacttgatacaaacta 620

                                                                       
Query: 421 taatcatctgaacgaaggaaaacctgattgagaaaatgtctccataagatcgggctg--g 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 621 taatcatctgaacgaaggaaaacctgattgagaaaatgtctccataagatcgggctgtgg 680

                                                                       
Query: 479 gtgttttcttaagtagtgattgatgggggg-agtgcccagtccattgtgagccgatggtc 537
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 gtgttttcttaagtagtgattgatgggggggagtgcccagtccattgtgagccgatggtc 740

                                 
Query: 538 ctgggttctataagaaagcagg 559
           ||||||||||||||||||||||
Sbjct: 741 ctgggttctataagaaagcagg 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)