BAC Information

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BAC

Clone NameMSMg01-111J17
Chromosome1 (Build37)
Map Location 48,326,291 - 48,326,833
singlet/doubletsinglet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111J17.T7 (MSMg01no111_j17.b1)MSMg01-111J17.TJ (MSMg01no111_j17.g1)
ACCAG324234AG324235
length1,1621,221
length of high quality
(start - end)
680 (120 - 799)317 (133 - 449)
definitionCHROMAT_FILE: MSMg01no111_j17.b1 PHD_FILE: MSMg01no111_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:09 2005CHROMAT_FILE: MSMg01no111_j17.g1 PHD_FILE: MSMg01no111_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
TAATGAGATATCACACCCTTTAACAACTATTTAGACAACATTAACTCACA
AAAGAGAACTATTTATAAATCTGTTTCACAGTCTGGTTACATCTAATTTT
GCCTATTTGTATGGTGGCATATTAACAGACTATCACAAGGAAGTGTTTAG
ATTTCATGGTTATATTTGGGGGAAAGCATGTGTAAATTTGAATTACTTAT
TTGCAAAAAAGATTTATGTTATATTTTATTTCTCTGTTGACAAACCAAAA
TAACAATAGAAGGGTGTGTTTACCTGTAGTTTCTTGCTTTTCATAACTTG
AATATAAAATTCAAAAGTGTATGCCCAATTAGATATCTTTACAGTTCCTC
CTTACTATGGTTTTGCTATAACTGGTATGGCAGAGTTGCTGGAAGAAGAA
CATATTCATTCACATTTGAACAAATTCAGGCTGTTTCCAGTGATGATCTC
TGATTTCTAGATGCTTTGTCACAGACCCTCTTTAAAATGATGCGGCAGGT
GCTTGATACCAAGTAGAGCTCTGGCACTGCTGCATGCATGAAATTGTTTC
CCCTGAAACTATTGCAAACTGTTGATTATGTACTTCCTTCGGGCATGTAC
ATTTATAAGAAAACAGTTGGAATAGTTATCTAATTAAATATAAAAGTGCT
AAACCATAAAAACAATATGTGAAATAGTAATATCTAAACCCATTTCTCAC
TAGTATCCAATTTTTAGGTATTAAAATGTATAAAAACCACACTTTTAATA
TACATGTATTTTGTGAACATGTGTGTGTGGGCTTTATATTTTTATGTATG
GTCAGATCTTAATTGAAGAATAGAAAGGCTTAAAAATAAATACCCGAGGC
AGGCAGATTTCTGTGTTCGAGGGCCGCCTGGTCTACAGAATGAGTTCCAG
GAGAACCAGGGCTACCCAGAGGAACCCTGTCTCCAAAAGCACAACAAAAT
TAAATCATTAAATCAATCCTTAAATAAATAAATTTCTTCCGGTTGTTTGT
ATAAAAACCCTTCCCAATTTTTGAAAAACCCCCAGGGAAAACCAACTGTT
TACCTTTAAAAGGCCCCCCATTCTGGGTTTAAAAACTTTTAAAAATATAT
TTTTGAAACCCC
TCTCTTTTTTNTACCGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXGCCATTAAAGCCCCCGAANACAGANNGGC
TGAGAAGNANCGGCATTAAAAGATCCCATCNTTAATCATNAGAGAAATGG
AAATCAAAACAACCCTGAGATGTCATCTCACACCAATCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAACAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTTCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTCCTACTGGAGGAT
CCCGTAATCCCTCTCCTGAGCATATATCCAGAAGATGTCCCAACCGGTAT
TATTTTTACATGCTCCACTGTTCATAGCAGACTTATTTATAATAGCCAGA
AGCTGTTTTAGAACCCCGATGCCCCTCAACAGAGGAATGGATACAAAAAA
ACGTGGTACATTTATACAATGGAGTTCTACTCAGCCATTAAAAGGAATGA
ATTTATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGTTA
CATGGATATTAGCCCTGAAACTTAGGATACCCAAGATATAAGATAAAATT
TGCAAAACACATGAAACTGAATAAGAATGAATACCAACGTGTAGACACTT
TGCCCCTCCTTAGAATTTGAACATTCTCCCCATGGAAGGAGTTACAGAAA
CAAAGTTTGGAGCTATGACTAAAGGAAGGACCATCTAGAGACTGCCCTAT
CTAGGGGATCCATCCCATAATTAGCCTCCACACGATGGACCCCATTGTTT
ACTCCTATCAAGTGGTTTGCCTGAAGGAACCCTGAATATAACTTGTCTCT
TGCAAAGACTAAGGCTGGGTGTCTTTTCAAATAACTTATATTGGAATGGC
TCCCAGTCCAGCCTATTGGAATGGGATTCACCGGGGCCCCCCAATGGTAT
GTAACTTTTTGGTAAAGTATTCCAAGGGTACCTTAAATAATATTCTTTCA
ACCCCTGGTAGGGGGGCTACCTACTCTTTATTGAATCTTTTAATCTTTTC
TGACTCTTTAGTTTTGCATATAATGTTTCTACAAAAGAAAGGCCCCTAAT
TCCGGGCCCTCTCTCATTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_j17.b1 MSMg01no111_j17.b1 CHROMAT_FILE:
MSMg01no111_j17.b1 PHD_FILE: MSMg01no111_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:09 2005
         (680 letters)



>mm_chr1_48326291_48327370
          Length = 1080

 Score =  934 bits (483), Expect = 0.0
 Identities = 530/549 (96%), Gaps = 6/549 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtttcacagtctggttacatctaattttgcctatttgtatggtggcatattaacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tctgtttcacagtctggttacatctaattttgcctatttgtatggtggcatattaacaga 484

                                                                       
Query: 61  ctatcacaaggaagtgtttagatttcatggttatatttgggggaaagcatgtgtaaattt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctatcacaaggcagtgtttagatttcatggttatatttgggggaaagcatgtgtaaattt 424

                                                                       
Query: 121 gaattacttatttgcaaaaaagatttatgttatattttatttctctgttgacaaaccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaattacttatttgcaaaaaagatttatgttatattttatttctctgttgacaaaccaaa 364

                                                                       
Query: 181 ataacaatagaagggtgtgtttacctgtagtttcttgcttttcataacttgaatataaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ataacaatagaagggtgtgtttacctgtagtttcttgcttttcataacttgaatataaaa 304

                                                                       
Query: 241 ttcaaaagtgtatgcccaattagatatctttacagttcctccttactatggttttgctat 300
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttcaaaagtatatgcccagttagatatctttacagttcctccttactatggttttgctat 244

                                                                       
Query: 301 aactggtatggcagagttgctggaagaagaacatattcattcacatttgaacaaattcag 360
           ||||||||||||||||||||||||||||||||||||||||||| || || |||      |
Sbjct: 243 aactggtatggcagagttgctggaagaagaacatattcattcatatctggaca------g 190

                                                                       
Query: 361 gctgtttccagtgatgatctctgatttctagatgctttgtcacagaccctctttaaaatg 420
           ||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct: 189 gctgtttccagtgatgaactctgatttctagatgctttgtcataggccctctttaaaatg 130

                                                                       
Query: 421 atgcggcaggtgcttgataccaagtagagctctggcactgctgcatgcatgaaattgttt 480
           || |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 129 atacggcaggtgcttaataccaagtagagctctggcactgctgcatgcatgaatttgttt 70

                                                                       
Query: 481 cccctgaaactattgcaaactgttgattatgtacttccttcgggcatgtacatttataag 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  cccctgaaactgttgcaaactgttgattatgtacttccttcgggcatgtacatttataag 10

                    
Query: 541 aaaacagtt 549
           |||||||||
Sbjct: 9   aaaacagtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)