Query= MSMg01no111_l04.b1 MSMg01no111_l04.b1 CHROMAT_FILE:
MSMg01no111_l04.b1 PHD_FILE: MSMg01no111_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:21 2005
(730 letters)
>mm_chr1_133237934_133239063
Length = 1130
Score = 1373 bits (710), Expect = 0.0
Identities = 725/730 (99%)
Strand = Plus / Minus
Query: 1 gttggggagatggcttagtcagtaaagcgttcgccacacaaacacgaagacctaagtttg 60
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 903 gttggggagatggcttagtcagtaaagtgcacgccacacaaacacgaagacctaagtttg 844
Query: 61 aatcccagtaacccatgcaaaagaaacatagacacttgtaatctcagagctggggagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 aatcccagtaacccatgcaaaagaaacatagacacttgtaatctcagagctggggagtag 784
Query: 121 aaacaaggagatccctgggtcttgctaaccagccagtctaatgattagaaagctccaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aaacaaggagatccctgggtcttgctaaccagccagtctaatgattagaaagctccaggt 724
Query: 181 tcagtgagagtccttgcctcagaaaataaactagaaagcaattgaaggagatactgtgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tcagtgagagtccttgcctcagaaaataaactagaaagcaattgaaggagatactgtgac 664
Query: 241 taacacagacccctggcatatatgcatgcatgcacacacactcaacaacaaaagagaaga 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 taacacagacctctggcatatatgcatgcatgcacacacactcaacaacaaaagagaaga 604
Query: 301 aggcaagaaattttggatatgaaaaatctatacttaaccaaatctttctcagaattattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aggcaagaaattttggatatgaaaaatctatacttaaccaaatctttctcagaattattt 544
Query: 361 tcttctttgaataaatctataacatacatattcagaagttgacatttgttccaaaacaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tcttctttgaataaatctataacatacatattcagaagttgacatttgttccaaaacaag 484
Query: 421 aaggctgctgagatgcttcagcacatttaagagcttatatagtactcttgcagaggatgt 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 483 aaggctgctgagatgcttcagcacgtttaagagcttatatagtactcttgcagaggatgt 424
Query: 481 gagtttgactcccaacacgcatgtctgcaggctcataactgcctatagctccaactctag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gagtttgactcccaacacgcatgtctgcaggctcataactgcctatagctccaactctag 364
Query: 541 gagatccagttctcctggcctctgtgggcaccagcactcacatgcacatgcccacacata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gagatccagttctcctggcctctgtgggcaccagcactcacatgcacatgcccacacata 304
Query: 601 gacacataattcaaaataaatcatttttaagaaagaaataactttaccctaacttgtgac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gacacataattcaaaataaatcatttttaagaaagaaataactttaccctaacttgtgac 244
Query: 661 ttctaaaatcctacctacctgttccccttttacctcaatacattggggttctacaaccca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttctaaaatcctacctacctgttccccttttacctcaatacattggggttctacaaccca 184
Query: 721 ttcctgaatt 730
||||||||||
Sbjct: 183 ttcctgaatt 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1130
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1120
Effective search space: 806400
Effective search space used: 806400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_l04.g1 MSMg01no111_l04.g1 CHROMAT_FILE:
MSMg01no111_l04.g1 PHD_FILE: MSMg01no111_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:21 2005
(705 letters)
>mm_chr1_133107157_133108261
Length = 1105
Score = 1208 bits (625), Expect = 0.0
Identities = 679/705 (96%), Gaps = 14/705 (1%)
Strand = Plus / Plus
Query: 1 gccaaggctatgcaaagaaaccctgtttcccataacaagaaggaaaaaccagaaacaaac 60
||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 209 gccaagggtatgcaaagaaaccctgtttccaaaaacaagaaggaaaaaccagaaacaaac 268
Query: 61 aaacaaacaaacaaaaacaaaacccttatagggatgctgtgctattcgctctctgtctta 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaacaaa--------aacaaaacccttatagggatgctgtgctattcgctctctgtctta 320
Query: 121 taagggaatgttcattaacaggctgctgagggggagctcagtcaaagcaccagcccagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 taagggaatgttcattaacaggctgctgagggggagctcagtcaaagcaccggcccagca 380
Query: 181 agcttcaggttccattgccagcagcagaaaaaaaaaaaaaaaaagcaaagcaaagcaaaa 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 agcttcaggttccattgccagcagcagaaaaaaaaaaa------gcaaagcaaagcaaaa 434
Query: 241 taagacagaatgcaagacagaaatctgcattgctcatcagtgcatctcaggtcttgtgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taagacagaatgcaagacagaaatctgcattgctcatcagtgcatctcaggtcttgtgtg 494
Query: 301 taggccaggctgctcccagaggcctggctgcaaactctgctagagtcgccatgaccccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 taggccaggctgctcccagaggcctggctgcaaactctgctagagtcgccatgaccccac 554
Query: 361 agactggagagggggcactgaagctttcaatgtacatcttaggacagttcgatataatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agactggagagggggcactgaagctttcaatgtacatcttaggacagttcgatataatcc 614
Query: 421 tttgtaagcacatatcacacttgttccatgggagcaggcacagagacagcggggacctgg 480
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cttgtaaacacatatcacagttgttccatgggagcaggcacagagacagcggggacctgg 674
Query: 481 gaatgtccgcgggagggccaggcatttggacaccacagagcacgtgcctgaaggctgtgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gaatgtccgcgggagggccaggcatttggacaccacagagcacgtgcctgaaggctgtgg 734
Query: 541 ggacttgagactgctcgtgagtcgtccgtaatgcctgcgcatttccccctcacagtcaga 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 735 ggacttgagactgctcgtgagtcgtccgtaatgcctgtgcatttccccctcacagtcaga 794
Query: 601 gcttgctcctttctctccttgctgtaagcacaagacaggaacgagccatttttcttaaat 660
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 795 gcttgctcctttctcaccttgctgtaagcataagacaggaacgagccatttttcttaagt 854
Query: 661 gtatcactaagccccccatagtgaacacttaaaaccttgctaaat 705
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 855 gtatcactaagccccccatagtggacacttaaaaccttgctaaat 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
