Query= MSMg01no111_m07.b1 MSMg01no111_m07.b1 CHROMAT_FILE:
MSMg01no111_m07.b1 PHD_FILE: MSMg01no111_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:30 2005
(563 letters)
>mm_chr1_77229764_77230726
Length = 963
Score = 961 bits (497), Expect = 0.0
Identities = 549/575 (95%), Gaps = 18/575 (3%)
Strand = Plus / Plus
Query: 1 aagttaccgaagcaattgtctacaaccaaacctt--ggtttaatggggagaaagagtggc 58
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 201 aagttaccgaagcaattgtctacaaccaaa--ataaggtttaatggggagaaagagtgg- 257
Query: 59 a-caatatgcaaattctgcccaacaaagataggaacaggtcaggtgtatggatgtcaggc 117
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agcaatatgcaaattctgcccaacaaagataggaacaggtcaggtgtatggatgtcaggc 317
Query: 118 ggcaggcaccgtgcagaatctccaccaaactctggctctttggttggtatagaagctctt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggcaggcaccgtgcagaatctccaccaaactctggctctttggttggtatagaagctctt 377
Query: 178 tccttggcttttcctcacacaaagttcattttgatgtatgtatgtttgtttgtacactca 237
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tccttggcttatcctcacacaaagttcattttgatgtatgtatgtttgtttgtacactca 437
Query: 238 gtatatatttatatatttaacacata------------tacatgtttgagtgagaattga 285
|||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 438 gtatatatttatatatttaacacatatacatacacgtgtacatgtttgagtgagaattga 497
Query: 286 aaagagtaggcaaaatattgtgatgagcacagcatgttgcttttcaaaactagttttaag 345
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 498 aaagagtaggcaaaatattgtgatgagcacagcaggttgcttttcaaaaatagttttaag 557
Query: 346 atttatcttttatttttatccatgtctataaacacactacttatatgcaggtgctcttgg 405
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 558 atttatcttttatttttatccatgtctataaacacgctacttatatgcaggtgctcttgg 617
Query: 406 aggtgagaagagtgtgtgggatcccctggagtcataaatattacaggcaggcaagaactg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aggtgagaagagtgtgtgggatcccctggagtcataaatattacaggcaggcaagaactg 677
Query: 466 tcttagtcttttaaggcagggtctctccctgaatatggaactcaggagttgttgttgtta 525
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 678 tcttagtcttttaaggcagggtctctccctgaatatggaactcaggtgttgttgttgtta 737
Query: 526 ttattgttggcttggtttggtttggtttggtttgg 560
|||||||||| |||||||||||| |||||||||||
Sbjct: 738 ttattgttggtttggtttggtttagtttggtttgg 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_m07.g1 MSMg01no111_m07.g1 CHROMAT_FILE:
MSMg01no111_m07.g1 PHD_FILE: MSMg01no111_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:30 2005
(767 letters)
>mm_chr1_77297994_77299161
Length = 1168
Score = 1067 bits (552), Expect = 0.0
Identities = 612/632 (96%), Gaps = 3/632 (0%)
Strand = Plus / Minus
Query: 2 ttttttctgcatcctagatgttccatgttcaattctatcctttcctataggccataggat 61
|||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct: 630 ttttttctgcatcccagatgttccacgttcgattctatcctttcctataggccataggtt 571
Query: 62 tttaaactgacagatgatgcatctatacaatacacagatattctctctacaggctggaaa 121
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 570 tttaaactgacaggtgatgcatctatacaatacacagatattctctctacaggctgtaaa 511
Query: 122 cgagctgccagccagtctagtcaggctatgaccatttcttagacatgaaagactttcaac 181
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 510 agagctgccagctagtctagtcaggctatgcccatttcttagacatgaaagactttcaac 451
Query: 182 caag-aaaaaaaatctgctgggtcagagtgaaggaagacagcagcatctatccatctgga 240
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 450 caagaaaaaaaaatctgctgggccagagtgaaggaagacagcagcatctatccatctgga 391
Query: 241 gagctggtatgtagctgtcctgctcaactatgtgcctttctgagtgcccaagaatttaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gagctggtatgtagctgtcctgctcaactatgtgcctttctgagtgcccaagaatttaga 331
Query: 301 ataaaaaataataggatttgggattacaacttatttggtagggtgtttggctagtaagca 360
||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 330 ataaaaagtaataggatttgggattgcaacttagttggtagggtgtttggctagtaagca 271
Query: 361 tgaagcccctaagccccagtaccacacaaaacagccaaggtgaaacagtcttgcaggctc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 270 tgaagcccctaagccccagtaccacacaaaacagccaaggtgaaacagtcttgcagtctc 211
Query: 421 tgcatgctggaggcagaagcaggaggatcagaagttaaaggtcattatgcctgtctacag 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tgcatgctggaggcagaggcaggaggatcagaagttaaaggtcattatgcctgtctacag 151
Query: 481 agtctgaggctagcttgggatacctgagacctgctctccaacaataaattaaaatcacta 540
|||||||||||||| |||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct: 150 agtctgaggctagc-tgggatacctgagacctggtctccaacactaaa-taaaatcacta 93
Query: 541 tacatttactgttaatcatgagattgggatgatgtgatgggtctaaaatccctgtcacct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 tacatttactgttaatcatgagattgggatgatgtgatgggtctaaaatccctgtcacct 33
Query: 601 tacttttttgcataaattaaatacttaagttt 632
||||||||||||||||||||||||||||||||
Sbjct: 32 tacttttttgcataaattaaatacttaagttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 767
Length of database: 1168
Length adjustment: 10
Effective length of query: 757
Effective length of database: 1158
Effective search space: 876606
Effective search space used: 876606
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
