Query= MSMg01no111_m08.b1 MSMg01no111_m08.b1 CHROMAT_FILE:
MSMg01no111_m08.b1 PHD_FILE: MSMg01no111_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:31 2005
(706 letters)
>mm_chr1_102364779_102365882
Length = 1104
Score = 1237 bits (640), Expect = 0.0
Identities = 689/706 (97%), Gaps = 2/706 (0%)
Strand = Plus / Plus
Query: 1 atcacattctcacacttaaatgctcaaattaccctcatatgcctacagcacaccactttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcacattctcacacttaaatgctcaaattaccctcatatgcctacagcacaccactttc 260
Query: 61 catcttcatgtgggaagagagacacatcttttgaggatgatcactggtaggtttgtttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcttcatgtgggaagagagacacatcttttgaggatgatcactggtaggtttgtttgc 320
Query: 121 tccagtggaagacccaagcacccaacacttttcatatcagctcactgtttgcacaacacc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tccagtggaagacccaagcacccaacacttttcatatcagctcactgtttgcacaacaac 380
Query: 181 tgtgaaatggagtttataaatgtttctggaggagattacatattggatgccagccctgca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgtgaaatggagtttataaatgtttctggaggagattacatattggatgccacccctgca 440
Query: 241 ctacatgtgccaacattcctttctgttgttttgcagccagtcatctgtcttaactgtaag 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ctacatgtgccaacattcctttctgttgttttgcagccagtcatctctcttaactgtaag 500
Query: 301 atatattgtgtgaaatcattatttatgagggaggtgggagccatgcagagaggcgtgctt 360
||||||||| ||||||||||| |||| |||||| ||||| |||||||||| | ||||||
Sbjct: 501 atatattgtctgaaatcattacttattagggagatgggaaacatgcagagaagagtgctt 560
Query: 361 gtctgagtatccttctctactactgtctgcaacttatttccttaggacaggctctctcaa 420
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 561 gtctgagtatccttctctactactgtct--aacttatttccttaggacaggttctctcaa 618
Query: 421 ggaacctgtagtaaactttcagcaagcaagttccaggaatttttttgtctctatttatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggaacctgtagtaaactttcagcaagcaagttccaggaatttttttgtctctatttatgc 678
Query: 481 cacacacccaagccagaggtgtaagtataggtgtccatacccatgtctagtttttatatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cacacacccaagccagaggtgtaagtataggtgtccatacccatgtctagtttttatatg 738
Query: 541 gatactgggcattttaacttagatccggctgagctatcttcccagtcctaatgcttgaca 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 739 gatactgggcattttaacttagatctggctgagctatcttcccagtcctaatgcttgaca 798
Query: 601 tttcatctagttaacctttcactttgtttcagctctagtgaatttgagaggtaaactact 660
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 799 tttcatctagttaacctttcactttgtttcagctctagtgaattttagaggtaaaccact 858
Query: 661 tgcttgtattttctgctcatgtcttcatttacaacagctcccccta 706
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tgcttgtattttctgctcatgtcttcatttacaacagctcccccta 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1104
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1094
Effective search space: 761424
Effective search space used: 761424
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_m08.g1 MSMg01no111_m08.g1 CHROMAT_FILE:
MSMg01no111_m08.g1 PHD_FILE: MSMg01no111_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:31 2005
(674 letters)
>mm_chr1_102524528_102525601
Length = 1074
Score = 1189 bits (615), Expect = 0.0
Identities = 657/673 (97%), Gaps = 4/673 (0%)
Strand = Plus / Minus
Query: 6 aaactccctttttaccaaacaagcccatgactgggccatacagaagactgataataaata 65
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1024 aaactccctttttaccaaacaagcccatgactgggttatacagaagactgataataaata 965
Query: 66 gtcctacactagactaagtttaaaacaaaactataagaaaattattagcatctgtccaaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 gtcctacactagactaagtttaaaacaaaactataagaaaattattagcatctgtccaaa 905
Query: 126 atatcatgaaaggtaattaaaacaatcttggagaagttcatttaggaagttttatgttag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 atatcatgaaaggtaattaaaacaatcttggagaagttcatttaggaagttttatgttag 845
Query: 186 ctggacagtggtgttgtacatctttaatcccagctcttgggaggcagaagcaggcagatt 245
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ctggacagtggtgttgcacatctttaatcccagctcttgggaggcagaagcaggcagatt 785
Query: 246 tctgagttccaagacagccagggttacacagagaaaccctgtctcgaaaaacc----aaa 301
||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||
Sbjct: 784 tctgagttccaagacagccagggttacacagagaaactctgtcttgaaaaaccaaaaaaa 725
Query: 302 aaaaaaaaaaaaaaaaaagttatatgctaaacagtacagggaaaccaactgggatttcta 361
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 724 aaaaaaaaaaaaaaaaaagttatatgctaaacagtccagggaaaccaactgggatttcta 665
Query: 362 gtgcacaggcaaatgcctaattagtgcacattgcatcctccttggaagacaaagagagac 421
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 664 gtgcacaggcaaatgcctaattagtgcacattgcatcctccttgaaagacaaagagagac 605
Query: 422 ccactcatagctggttctacttggtgtatgtgaactgaaagatcctgcctcatgagaaag 481
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 604 cccctcatagctggttctacttggtgtatgtaaactgaaagatcctgcctcatgagaaag 545
Query: 482 ttagagagaactatgaaagaaggcatttagagataacagcagagccaggcagtggtggtg 541
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 544 ttagagagaactatgaaggaaggcatttaaagataacagcagagccaggcagtggtggtg 485
Query: 542 ctcgcctttaattccagcacttgggaggcagaggcaggtgggtttctgagtttgaggcca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctcgcctttaattccagcacttgggaggcagaggcaggtgggtttctgagtttgaggcca 425
Query: 602 gcctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gcctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcaa 365
Query: 662 aaaaaaaaaaaac 674
||||| |||||||
Sbjct: 364 aaaaacaaaaaac 352
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
