BAC Information

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BAC

Clone NameMSMg01-111M14
Chromosome1 (Build37)
Map Location 142,083,938 - 142,084,647
singlet/doubletsinglet
Overlap genenone
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneKcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111M14.T7 (MSMg01no111_m14.b1)MSMg01-111M14.TJ (MSMg01no111_m14.g1)
ACCAG324369AG324370
length1,1781,187
length of high quality
(start - end)		710 (80 - 789)701 (84 - 784)
definitionCHROMAT_FILE: MSMg01no111_m14.b1 PHD_FILE: MSMg01no111_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:33 2005CHROMAT_FILE: MSMg01no111_m14.g1 PHD_FILE: MSMg01no111_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGTCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCC
ACAATCACTTTTCCCCGTTTATTTACCAGTTATGTATCTCTATGATAGCC
TCTATCTGTTGTAAAAAGAGAAAGCTTTTTTGATGAAGGATGAGAACTGA
ACTTGTCTCTGGGTATTTAAGGACAAATATTTAGAATATAGTTGGAAGCT
GTATTAATTTAGCAAAATAGGGGTAATAAGTTTTCTCCTAAGACATTTCC
AGCCATCATTCCTGGCTAGGTTTTCAATAACAGGCAGAAATCCCCTCCTA
TTGAGTCTGCCTTAATACCAGTTAGGTATTGATTACTCTTGTGATGTTAG
TGGCACTATTGTAGCATTTAGTGATGATATCTTTATTGAGCTAGTTGTTC
TGAGTAACAATTAATTAAACATTATAAAAAGTACAACAGTACCTAAAGAC
ATGTTGAAGGGAAAAGTGTTACGTAGAACCAATGTTTTGGAGAGAACTGT
CTTAGCTCTGATTTTTGAACTAACAGCAGCTACAAGTACTTATTTGTAAC
TAAATTTAATTTTAAGTTAATTAGGGAGAGAGTAGATGGTAGCTAACACT
CATGCATCCAAGAGAGTAAATACCTCATGAATGATAATCCAGAGCAAGGA
AAGAAAATAGTAGAGTAGACATGACCAGGAGACTGAACCATGAGAGGAGA
GATAGGAAGAGAGCAAGAGAGGAGGACCAAGAGCATTAAGAGAGAGCCAA
GAGCCAAGAGATGGCTAAAAGCATGCATGACTGAAATGATTGGGTTATAC
ATGAATGTGAAGCAGAAGGAATAGAAGCCAATAAGCTGGAGTTTAGGGTA
GGAGGCAAAGTGAAGAGAGCTGAGGGGAGCCCCAAATATTGAGTTAGCCT
AGAAGGCCGCATGTGCTTTGGTATGCTAAAAGGCACCCCAGTTATCCATT
TTGTCCTCGGTTGTTTTGGTCCTGACTTTGAATTTAGTTAGCCAATTAAG
AAAAGAAAAAATTTAAAAAACTGGCTAAATTCCACTTCCCGTAAGGGACC
GGCCATTACCGGCCCTGAAAATCCTGGAATGCAGTTCCCTAAGGCTGGGG
AATTTTCAGAAAACACTTTTGCCCTCTTGTGAAACCTGGGGATTTTTCCC
CTCTCAACCCCTGGTCCCCCCCTTTTTA

GATACTTTNNNTTACATCGGAGGCGTGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTTTAGAAGTTATACTCCAGATAAAC
AAATAACCTTATTTCAAAAGTGGGGAACAGACCTAAACAGAGAATTCTCA
ACTGAGGAAACTTGAATGGCTGACCTTCTTAGTCATCGGGGAAATACAAA
TCAAAATGACACTGAGATTCCACCTCAAACCACTCAGAATGGCTAAGATC
AAAAACTCGGGTGACAGCAGATGCTGTCGAGGATGTGGAGAAAGAGGAAT
ACTCCTCCATTGCTGGTGGAACTGCAAGCTAGTACAACCACTATGAAAAT
AAGTCTGGTGATTCCTCAGAAAATTGGATATCGTACTACATAAGGACCCA
ACTATATACCACTCCTGGGCACCCAGAATATGCTCCAGCATGTAATGAGG
ACACATACTCCAGTATGTTCATAGCAGCTATATTTATAATAACAAGAAGC
TGGAAACGACCCCGAAGTCCCTCAATAGAACAATGAATACTGAAAATGCA
GTATATTTACACAATGGAATACTACTCAGCTATTAAAAACAGTAACTTAA
TGAAATTCACAGGCAAATTAATAGATCTAGAAAATATCATGCTGAGTGAG
ATAACTCAGTCACAAAAGACCACACATGGTAGGTACTCACTAATAAGTGG
GTATTAGGCAAAGAATATGGAATACTTCCATAGGGACCACATGAAGCTCA
AAGGGAAGGAAGACCAAAGACTGGATGCTTCAGTCCTACTTAGAAAGGAA
ACAAAATAATTAAGGGAAGTAGAGGGTGGAAGGGGCTTGCGAGGAAGAGA
AGAGGGCAAGGGGGAAAAGAGGGGAAGAATCTTGAAATAAGACGGAGGAG
ATGTACCGAGTGTCTGGAAATTGAACAAAGGTGTGTAGCAATGAGGGAGG
GGAAACTGGGGTTACCACCTCAAAAGGCCCAGATGCCCAGAAATGCAGAA
CTTCCCCAGGACCTTTACCGAAATTAACTTTTACTTCACAATCCCCCCAC
AAAGGGGAAAGGTAAAACCTGGTCAGGAACCTTATCTTAAGAGTTATGGG
ATGGGCCCCCCGGGCTCCAGGGAGGGATCCCCCCTTCCCCCTCTGCCTAA
AAAATTTATCCCCCAAAACCTCGTTTCTACATAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_m14.b1 MSMg01no111_m14.b1 CHROMAT_FILE:
MSMg01no111_m14.b1 PHD_FILE: MSMg01no111_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:33 2005
         (710 letters)



>mm_chr1_142083738_142084847
          Length = 1110

 Score = 1357 bits (702), Expect = 0.0
 Identities = 708/710 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgtatctctatgatagcctctatctgttgtaaaaagagaaagcttttttgatgaagg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ttatgtatctctatgatagcctctatctgctgtaaaaagagaaagcttttttgatgaagg 260

                                                                       
Query: 61  atgagaactgaacttgtctctgggtatttaaggacaaatatttagaatatagttggaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgagaactgaacttgtctctgggtatttaaggacaaatatttagaatatagttggaagc 320

                                                                       
Query: 121 tgtattaatttagcaaaataggggtaataagttttctcctaagacatttccagccatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtattaatttagcaaaataggggtaataagttttctcctaagacatttccagccatcat 380

                                                                       
Query: 181 tcctggctaggttttcaataacaggcagaaatcccctcctattgagtctgccttaatacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctggctaggttttcaataacaggcagaaatcccctcctattgagtctgccttaatacc 440

                                                                       
Query: 241 agttaggtattgattactcttgtgatgttagtggcactattgtagcatttagtgatgata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttaggtattgattactcttgtgatgttagtggcactattgtagcatttagtgatgata 500

                                                                       
Query: 301 tctttattgagctagttgttctgagtaacaattaattaaacattataaaaagtacaacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttattgagctagttgttctgagtaacaattaattaaacattataaaaagtacaacag 560

                                                                       
Query: 361 tacctaaagacatgttgaagggaaaagtgttacgtagaaccaatgttttggagagaactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacctaaagacatgttgaagggaaaagtgttacgtagaaccaatgttttggagagaactg 620

                                                                       
Query: 421 tcttagctctgatttttgaactaacagcagctacaagtacttatttgtaactaaatttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttagctctgatttttgaactaacagcagctacaagtacttatttgtaactaaatttaa 680

                                                                       
Query: 481 ttttaagttaattagggagagagtagatggtagctaacactcatgcatccaagagagtaa 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 ttttaagttaattagggagagagtagatggtagctaacactcatgcatccaagagaataa 740

                                                                       
Query: 541 atacctcatgaatgataatccagagcaaggaaagaaaatagtagagtagacatgaccagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atacctcatgaatgataatccagagcaaggaaagaaaatagtagagtagacatgaccagg 800

                                                                       
Query: 601 agactgaaccatgagaggagagataggaagagagcaagagaggaggaccaagagcattaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agactgaaccatgagaggagagataggaagagagcaagagaggaggaccaagagcattaa 860

                                                             
Query: 661 gagagagccaagagccaagagatggctaaaagcatgcatgactgaaatga 710
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gagagagccaagagccaagagatggctaaaagcatgcatgactgaaatga 910


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space:   770000
Effective search space used:   770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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