BAC Information

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BAC

Clone NameMSMg01-112E16
Chromosome1 (Build37)
Map Location 138,490,346 - 138,626,485
singlet/doubletdoublet
Overlap geneZfp281
Upstream geneEG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14
Downstream geneLOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112E16.T7 (MSMg01no112_e16.b1)MSMg01-112E16.TJ (MSMg01no112_e16.g1)
ACCAG324740AG324741
length744776
length of high quality
(start - end)
360 (73 - 432)203 (75 - 277)
definitionCHROMAT_FILE: MSMg01no112_e16.b1 PHD_FILE: MSMg01no112_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:24 2005CHROMAT_FILE: MSMg01no112_e16.g1 PHD_FILE: MSMg01no112_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,490,346 - 138,490,696)(138,626,283 - 138,626,485)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAGCCGCGG
AATTCACTAACTATCCCGGATAGTGAACTTCTGAAATCCCCCATCTCTAC
CTCCCCTGAGCTGGGATTATAGGCACACAGCTGTGGTGGTCTCTGGTGCT
ATCTCTCTCCCTTGCGTGCGTGATCTCTCTCTCTCCTCTAATTCTGTATC
TATCGTCTGTCTATCTGTCTGTCTGTCGTGTGTATGTGTATATGATATGT
GTGTGTGCGCACGTTTGTGAGTGTGGGTGTGCATGTGCCACACCATTCCT
TGTTTCAGGCTTACCACTGAGTTTGCCAGGCTAGCTCAGCCTCAGGCTGC
TGGGGAATCTCTTGTCTCTGGCTTCCATCATACTGCACAACTTCATAGTT
ACAGAGCTTTGCTGCTATGCCTGGCTTTGCGCGGGTTCTGAGAATGGAAA
TTCAAACTCTCATGCTTGCCTGGCAGTCCCTTTCCTCACTGACCCATCTT
TCTCTGTCCACATCGGATTCTGATGCTAGTGCTGGGGACCAAAGTCAGGC
CTTCATGCTTGTACAACACACCCTTTACCCACTGGACCACCTCCCAGTCT
TTTCTAGTTATAGCTTATAAAACATCTTCTTCCCCTGCCTATCCTTCCAC
CCTGTCTTTTCCATGCTATGGAATGGAATCCTAAGCCTGCTGGTATGTTA
ACGCAAGCCACCTTGCTGGGGCAGTTACCCCCCAGCGGTTAGCT
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATATTCATTTCTTGAGTTTTTCCTAA
GTCCTACAGGGCATTTGAGAGTCCTCGCACATTCTCCTTCTGGGCTTCAA
ATGTCATATGCGTTTTGTCAAGAAGCATTCTGAGGGATGGGCTGGGATTC
AATGGGTGGCATGCCTGCCTGGCACTGAGACCAGGGGGTGGGTGGGGGTG
GTGATCCCAGGCTCTGCATAAACCCAGATCAGTGGTTCATGCCGGTAATC
CCTGCTTGGGAGATGATTATGTTTGTTTCATATATTCACGGCCATCTTCA
GCTGATAGATAATTTCAAGCCGATCCTACGCTATATGAGAGCCTACTTAA
TTTTTAAGACTTTCCAACCGCCTGTTGAGATGGCTTCATGTTCTACGGCA
TTGACTGTTTTTCCTGAGGTCTTTTCCCGTATTCCCGTTGTTGTTCTATA
ACCGCCTTTTCCTTTTGTTTCTTTACCAACCCCCCCCTTTCCGCGTAATC
CCGTGTTGTCTTGTATACTCACTCGTGCTGCCCTGTCCTGCTCTCATCCT
CCTCTTATTTTGTTCGCCTCTTTTCCCTCTCATCCCGTTTGTTATCTCTC
TTCCCTGTATCACTTTCTGTCTCCCCCCCTTCTATTTCCCCCCTCGTTCG
TGCAGTTTCTGCTTGCCCCTTCCCCCTATTTCTCCTCGCCTTTCCCCCTT
GTCCCCCTTTCCTTTATCCCCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_e16.b1 MSMg01no112_e16.b1 CHROMAT_FILE:
MSMg01no112_e16.b1 PHD_FILE: MSMg01no112_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:24 2005
         (360 letters)



>mm_chr1_138490137_138490897
          Length = 761

 Score =  629 bits (325), Expect = 0.0
 Identities = 347/357 (97%), Gaps = 7/357 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   aacttctgaaatcccccatctctacctcccctgagctgggattataggcacacagctgtg 63
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 210 aacttctgaaatcccccatctctacctcccctgagctgggattacaggcacacagctgtg 269

                                                                       
Query: 64  gtggtctctggtgctatctctctcccttgcgtgcgtgatctctctctctcctctaattct 123
           |||||||||||||||||||||||||||    |||||||  ||||||||||||||||||||
Sbjct: 270 gtggtctctggtgctatctctctccct----tgcgtga--tctctctctcctctaattct 323

                                                                       
Query: 124 gtatctatcgtctgtctatctgtctgtctgtcgtgtgtatgtgtatatgatatgtgtgtg 183
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtatccatcgtctgtctatctgtctgtctgtcgtgtgtatgtgtatatgatatgtgtgtg 383

                                                                       
Query: 184 tgcgcacgtttgtgagtgtgggtgtgcatgtgccacaccattccttgtttcaggcttacc 243
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcgtacgtttgtgagtgtgggtgtgcatgtgccacaccattccttgtttcaggcttacc 443

                                                                       
Query: 244 actgagtttgccaggctagctcagcctcaggctgctggggaatctcttgtctctggcttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actgagtttgccaggctagctcagcctcaggctgctggggaatctcttgtctctggcttc 503

                                                                    
Query: 304 catcatactgca-caacttcatagttacagagctttgctgctatgcctggctttgcg 359
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catcatactgcagcaacttcatagttacagagctttgctgctatgcctggctttgcg 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 761
Length adjustment: 9
Effective length of query: 351
Effective length of database: 752
Effective search space:   263952
Effective search space used:   263952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no112_e16.g1 MSMg01no112_e16.g1 CHROMAT_FILE:
MSMg01no112_e16.g1 PHD_FILE: MSMg01no112_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:25 2005
         (203 letters)



>mm_chr1_138626083_138626685
          Length = 603

 Score =  369 bits (191), Expect = e-107
 Identities = 200/203 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattcatttcttgagtttttcctaagtcctacagggcatttgagagtcctcgcacattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atattcatttcttgagtttttcctaagtcctacagggcatttgagagtcctcgcacattc 344

                                                                       
Query: 61  tccttctgggcttcaaatgtcatatgcgttttgtcaagaagcattctgagggatgggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tccttctgggcttcaaatgtcatatgcgttttgtcaagaagcattctgagggatgggctg 284

                                                                       
Query: 121 ggattcaatgggtggcatgcctgcctggcactgagaccagggggtgggtgggggtggtga 180
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 283 gggctcaatgggtggcatgcctgcctggcactgagaccagggggtgggtgggggtgggga 224

                                  
Query: 181 tcccaggctctgcataaacccag 203
           |||||||||||||||||||||||
Sbjct: 223 tcccaggctctgcataaacccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)