BAC Information

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BAC

Clone NameMSMg01-112H01
Chromosome1 (Build37)
Map Location 75,996,434 - 75,996,678
singlet/doubletsinglet
Overlap genenone
Upstream geneIhh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112H01.T7 (MSMg01no112_h01.b1)MSMg01-112H01.TJ (MSMg01no112_h01.g1)
ACCAG324853AG324854
length744735
length of high quality
(start - end)
249 (70 - 318)364 (77 - 440)
definitionCHROMAT_FILE: MSMg01no112_h01.b1 PHD_FILE: MSMg01no112_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:36 2005CHROMAT_FILE: MSMg01no112_h01.g1 PHD_FILE: MSMg01no112_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCGAAGAATCCGCGGA
ATTCCACCTTATCTCAACTTAAATTTTCTTCCATCAGTGGCAAATAATGC
CTACTGGATAGCCAGGAAATTTCCAAACTGGTGCTTTTTGTTTGTTTGTT
TGTTTGTTTTAACATCTTTACACAACCCAGAGAGGTTCAGGAGCTGCACA
ATCGTGAGTTATTATGACTTGTTAATGGTAGTTGTTTGTTGGACTGGTGT
GGTATGGATTTGTGGGACAGGGCATAGGGCATGCATTTCAACTGTTCACT
CTTGCCCTACTCTGGAGCCTTTTTTTCACATAATAGGAAACACATTAGTC
TGATTCTGTTTGCTAAAGCACAACACTCAATATAAGACAATGACTAAAGA
AAAGAGGCTTATTTGTCCCAAGCATCAAGAGGCCCAAGAACCTGCCACTA
ACATTTACTTGATTCTTGCTGTTGCTGCCTAGTTACACCCTATCATACCA
TATAACATCTTGCCGAGAACTTCGCGTACATGAATGAATGACCTGCCATT
CCTGAAACTGGGAGCTACATATACCACTCTTGTTTTATTTTGATAATAGC
ATTCTATGAGTTCATTCCCACAGGATCTATCACAGACCCTTGAAAGTATA
CCACCTCTCCCCCGATCCATGCTGTTTTATTAGTCTGCCCCCTTACTTTC
TTCATCCTTCTTCAATTTTCCATAGGGTTTTACCTCCCCTCCTA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGAAACTAAAAATAAATATAC
TATATGGCCCAGCTACACCATTCCTGACCCAGAAGACTAGTCATCTTCCT
CCACAAATAAATGATGAGCAATGTTCACTGATGTCCTATTCACAGTCACG
AGGAAATGGGAACAAACTAAGTGTCCCTCAGCAGATAAATGGGTAATGAA
AATGTGACTCATATACACAATGGAATACTATTTAGCTGTCAAGAAAAATG
AAATCATGAAATTTTTAGATAAGTGGATAGAACTGAAAAATATTATATTG
AGTAACCCAGATGTAAAAAGACAAATACTAAATATTCTTTCTCATCTGTA
GTTCCTAGTTCTAAATCTTTGGTGAAAAAAATAAAATGTGGGGCAACCAT
AGAAACCAGGAAAGTATAAAGGGACCATGGATGGGAGATTGTGAAGGATT
TCTTGAGAGGGGAATAACAGGACATGTGTGATAAGAAAGAGAATGTAGAA
AAGTGAGGAGGGGGGCTCTAACTGGGGCAAGGGCTAATGTTAATACTTAA
CGAAATGAAGGACAAGGGACAAATAATACCAAGACTATTTGAAGAAACCT
CACAGAATTCAAATATTTTATACTTCTTTAAGATTATATACACCTCACTA
TCACCCTATTGTACTTATATATCCATTTATACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_h01.b1 MSMg01no112_h01.b1 CHROMAT_FILE:
MSMg01no112_h01.b1 PHD_FILE: MSMg01no112_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:36 2005
         (249 letters)



>mm_chr1_75996230_75996878
          Length = 649

 Score =  447 bits (231), Expect = e-130
 Identities = 243/249 (97%), Gaps = 4/249 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaattttcttccatcagtggcaaataatgcctactggatagccaggaaatttccaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 taaattttcttccatcagtggcaaataatgcctactggatagccaggaaatttccaaact 264

                                                                       
Query: 61  ggtgctttttgtttgtttgtttgtttgttttaacatctttacacaacccagagaggttca 120
           ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 265 ggtgctttttgtttgtttgtttgttt----taacatctttacacaacccagagaggttca 320

                                                                       
Query: 121 ggagctgcacaatcgtgagttattatgacttgttaatggtagttgtttgttggactggtg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ggagctgcacaatcgtgagttattatgacttgtttatggtagttgtttgttggactggtg 380

                                                                       
Query: 181 tggtatggatttgtgggacagggcatagggcatgcatttcaactgttcactcttgcccta 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 tggtatggatttgtgggacagggcatagggcacgcatttcaactgttcactcttgcccta 440

                    
Query: 241 ctctggagc 249
           |||||||||
Sbjct: 441 ctctggagc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)