Query= MSMg01no112_h16.b1 MSMg01no112_h16.b1 CHROMAT_FILE:
MSMg01no112_h16.b1 PHD_FILE: MSMg01no112_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:38 2005
(246 letters)
>mm_chr1_180027370_180028015
Length = 646
Score = 414 bits (214), Expect = e-120
Identities = 238/246 (96%), Gaps = 2/246 (0%)
Strand = Plus / Minus
Query: 1 ttgaattagctt-aattacagcttaaaagggtgaggctatgtggcacgcaaattatcttc 59
||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 ttgaattagtttaaattacagcttaaaagggtgaggctatgtggcacgtaaattatcttc 386
Query: 60 aacaaagcttgttaaagacaggaaaggaaaatgttctcataaccttcccacctttctgct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacaaagcttgttaaagacaggaaaggaaaatgttctcataaccttcccacctttctgct 326
Query: 120 acaacagagatggccttcagtctggttttgtagggactgcttctgctgtcccacttcttc 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 325 acaacagagatggccttcagtctggttttgtagggacggcttctgctgtcccacttcc-c 267
Query: 180 ttgtgttataaaagcaggaagaatttgagttctggcttattaatgttctgaagatccttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagtgttataaaagcaggaagaatttgagttctggcttattaatgttctgaagatccttt 207
Query: 240 gagtgg 245
||||||
Sbjct: 206 gagtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no112_h16.g1 MSMg01no112_h16.g1 CHROMAT_FILE:
MSMg01no112_h16.g1 PHD_FILE: MSMg01no112_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:39 2005
(441 letters)
>mm_chr1_180043526_180044367
Length = 842
Score = 797 bits (412), Expect = 0.0
Identities = 433/440 (98%), Gaps = 1/440 (0%)
Strand = Plus / Plus
Query: 1 tctgtcttagcttgccttgcaactgtaataaaacacctaaaaaaaaaaaaaa-cctagat 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tctgtcttagcttgccttgcaactgtaataaaacacctaaaaaaaaaaaaaaacctagat 260
Query: 60 tcaaagaaggaaggacttactttgaggttttgaggtcccacaggggagaccccattgctt 119
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tcaaagaaggaaggagttactttgaggttttgaggtcccacagaggagaccccattgctt 320
Query: 120 ctagaactgtggcaaggcagtagcatcagaacaagagtagaagaggagaagagggtccat 179
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ctagaactgtggcagggcagtagcatcagaacaagaggagaagaggagaagagggtccat 380
Query: 180 gagtcagacaccaaggaggaaaaaactgaggttccagtttccctttaaggattccaaccc 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gagtcagacaccaaggaggaaaaaactgaggttccggtttccctttaaggattccaaccc 440
Query: 240 ctcaggtccatcatcctgtggtccatgtcaaatgtgagctgttaagtcattcttatccaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaggtccatcatcctgtggtccatgtcaaatgtgagctgttaagtcattcttatccaa 500
Query: 300 accaaaaccagctacttcttaactcactcatttccatgcatgctttaccatgagttccca 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 accaaaaccagctacttcttaactcactcatttccatgcatgctttatcatgagttccca 560
Query: 360 actgaaagttgctacatactatcctcaatcaaaaagaaaaactcgagagagtctttagct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgaaagttgctacatactatcctcaatcaaaaagaaaaactcgagagagtctttagct 620
Query: 420 gagagcacaaagatggagta 439
||||||||||||||||||||
Sbjct: 621 gagagcacaaagatggagta 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 842
Length adjustment: 9
Effective length of query: 432
Effective length of database: 833
Effective search space: 359856
Effective search space used: 359856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
