BAC Information

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BAC

Clone NameMSMg01-112I16
Chromosome1 (Build37)
Map Location 50,158,910 - 50,159,484
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666924, C230029F24Rik, LOC627430, LOC100041981, EG666962
Downstream geneEG666970, LOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112I16.T7 (MSMg01no112_i16.b1)MSMg01-112I16.TJ (MSMg01no112_i16.g1)
ACCAG324926AG324927
length737733
length of high quality
(start - end)
579 (48 - 626)415 (75 - 489)
definitionCHROMAT_FILE: MSMg01no112_i16.b1 PHD_FILE: MSMg01no112_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:43 2005CHROMAT_FILE: MSMg01no112_i16.g1 PHD_FILE: MSMg01no112_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAGAATGCGCGG
AATTCTACAAAGTATCCATTTTCATTAAATTATACCCTTATATTTTGAAT
GAAAGAAATAAAATGATTCCATAAGCAAGAGTTTCTGTGTATAAATTCTG
CAGTGCAATTTCATAGAACAGAAACAGATGAAGAGGTCAGGTAGTTATAA
GCTAATGAGAAATAAATTGCTATAATCACTGACCTAACATTGCCTGAAGG
ATTTCTCTCTGCAGTAATGGATTCATCTGGCATAGGGTCTTAATGTTGCT
GTTTGAAACTCTTGTTTGGCATTTGTAATATTATTCTAAGGTTTGATTAT
ATCATGAACAAGTTAATCCATTACAAAGCACTTGCCTGAAGTGATTTGAT
TTTAATGTTTCATAAGTAGCCAGTTGTATGGGAGTAGAAGAATAATTGAC
TCTCTAACACTGTGCAAGGACTCATCAGACTATACTCTATCCATTTAATT
TTGTTTTATTGAACAACATATACACATATTTTGTTTTTATTCTTAGCTTT
GAGAAAAATATGATTGCTCATATCATATATGACCAAGTTGAACTCTCTCT
TGACACATTTTTATTATTGATATGCTATATCCAACCTTAAACTATTTACT
AATCATGAGTATAACATTTTCTATATAACAATCTTTTAGTCACTCATCTT
AAAACTTTCCCTTATACAGTTACCAAACCTACACACT
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTT
AAAATAGAGTTATTTGGTTTTCTAGAGTCCAACTTCTTGAGTTCTTTATA
TATATTGGATATGAACCCCATATCAGATTTAGGATAGGTAAAGATCTTTT
CCCAATCTGTCAATTGCTGTTTTGTCCTATTGACTGTGTCATTTGCCTTA
CAGAAACTTGTTGACAGGAGCCTGATATAGCTGTTCCCAAGAGGTTCTGC
CAGTGCCTGGCAAATACAGAAGTGGATCCTCTCAATAATCAATTGGATGG
AGCACAGAGTACCCAATGAAGGAGCTAGAGAAAGTACCCCAGGAGCTGAA
GGGGTTTGCAGCCCCATTGGAGGAACAATAATATGAACTAACCACTACCC
CCAGAGCTCCCTGGGACTAAACCTCCAACCAAATAAAGTACATGGTGGGA
CTTGTGGCTGCAGTTGCATATGTATCAGAGGATGGCTGAGTTGGTCGTCA
ATGGGAGAAGAGGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGCATAGG
GGAATACCAGGGTCAGGAACCTGTAGTGTTTGGTTTGCGGATCAGGTCAG
AGTGCAGGGGATAGGGGATTTTTAGAGCGGATACTAGGAAAGCCACTATT
TTTTGACATATCATTACCGAAATATCTAACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_i16.b1 MSMg01no112_i16.b1 CHROMAT_FILE:
MSMg01no112_i16.b1 PHD_FILE: MSMg01no112_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:43 2005
         (579 letters)



>mm_chr1_50158708_50159686
          Length = 979

 Score = 1067 bits (552), Expect = 0.0
 Identities = 570/576 (98%), Gaps = 2/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctacaaagtatccattttcattaaattatacccttatattttgaatgaaagaaat 62
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctacaaagtaactattttcattaaattatacccttatattttgaatgaaagaaat 262

                                                                       
Query: 63  aaaatgattccataagcaagagtttctgtgtataaattctgcagtgcaatttcatagaac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaatgattccataagcaagagtttctgtgtataaattctgcagtgcaatttcatagaac 322

                                                                       
Query: 123 agaaacagatgaagaggtcaggtagttataagctaatgagaaataaattgctataatcac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaaacagatgaagaggtcaggtagttataagctaatgagaaataaattgctataatcac 382

                                                                       
Query: 183 tgacctaacattgcctgaaggatttctctctgcagtaatggattcatctggcatagggtc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgacctaacattgcctgaaggatttctctctgcagtaatggattcatctggcatagggtc 442

                                                                       
Query: 243 ttaatgttgctgtttgaaactcttgtttggcatttgtaatattattctaaggtttgatta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttaatgttgctgtttgaaactcttgtttggcatttgtaatattattctaaggtttgatta 502

                                                                       
Query: 303 tatcatgaacaagttaatccattacaaagcacttgcctgaagtgatttgattttaatgtt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tatcatgaacaagttaatccattacaaagcacttgcctgaagtgatttgattttaatgtt 562

                                                                       
Query: 363 tcataagtagccagttgtatgggagtagaagaataattgactctctaacactgtgcaagg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcataagtagccagttgtatgggagtagaagaataattgactctctaacactgtgcaagg 622

                                                                       
Query: 423 actcatcagactatactctatccatttaattttgttttattgaacaacatatacacatat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 623 actcatcagactatactctatccatttaattttgttttattgaacaacatatagacatat 682

                                                                       
Query: 483 tttgtttttattcttagctttgagaaaaatatgattgctcatatcatatatgaccaagtt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttgtttttattcttagctttgagaaaaatatgattgctcatatcatatatgaccaagtt 742

                                               
Query: 543 gaactctctcttgacacattttt-attattgatatg 577
           |||||||||||||| | |||||| ||||||||||||
Sbjct: 743 gaactctctcttgaaa-attttttattattgatatg 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)