Query= MSMg01no112_l03.b1 MSMg01no112_l03.b1 CHROMAT_FILE:
MSMg01no112_l03.b1 PHD_FILE: MSMg01no112_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:56 2005
(621 letters)
>mm_chr1_90302474_90303495
Length = 1022
Score = 1172 bits (606), Expect = 0.0
Identities = 615/618 (99%), Gaps = 1/618 (0%)
Strand = Plus / Plus
Query: 5 ggaattctgcaggggcattttaaaagtcattgctttctagcttccatcagagcccaccct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctgcaggggcattttaaaagtcattgctttctagcttccatcagagcccaccct 264
Query: 65 gcacgcctggtgctaacacttaattatagccaagagaatctgagaaatgcagtggtcccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcacgcctggtgctaacacttaattatagccaagagaatctgagaaatgcagtggtcccc 324
Query: 125 cc-tccctcaccccagcaaacgtcaagcaaaatcaatagctcagtgctggcaacaggatg 183
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctccctcaccccagcaaacgtcaagcaaaatcaatagctcagtgctggcaacaggatg 384
Query: 184 ctgttgttcccttcatctcctccgctcatctgcaattgcttttattactgcagttcattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgttgttcccttcatctcctccgctcatctgcaattgcttttattactgcagttcattt 444
Query: 244 aatgagtccagagcgtttggagccagatggtgacattagttcaatctggaagactctaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgagtccagagcgtttggagccagatggtgacattagttcaatctggaagactctaat 504
Query: 304 ggaattgagttcaaaccaggttaaaagtaatggaattacaaattccagtggtcattgtct 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 ggaattgagttcaaaccaggttaaaagtaacggaattacaaattccagtggtcattgtct 564
Query: 364 cgtggtattacgctctgggtacttgttatacaccagaagttagcgccagcttcaaatgaa 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtggtattacgctctgggtacttgttatacaccagaagttagcgccagcttcaaatgaa 624
Query: 424 agacctgaaagacagttgagtgagacctggtgcactcatacactcactcatccgctgcat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agacctgaaagacagttgagtgagacctggtgcactcatacactcactcatccgctgcat 684
Query: 484 gcttcattactctccctatcacaaacacggccattgtggtttctgaaccatggcctctgt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcttcattactctccctatcacaaacacggccattgtggtttctgaaccatggcctctgt 744
Query: 544 agtggaggtggcaggcagagctaagccaacaggaaaatcactccgcgtgagtgcagtctc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agtggaggtggcaggcagagctaagccaacaggaaaatcactccgcgtgagtgcagtctc 804
Query: 604 taggaagggaggactctg 621
||||||||||||||||||
Sbjct: 805 taggaagggaggactctg 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_l03.g1 MSMg01no112_l03.g1 CHROMAT_FILE:
MSMg01no112_l03.g1 PHD_FILE: MSMg01no112_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:56 2005
(637 letters)
>mm_chr1_90438118_90439154
Length = 1037
Score = 1162 bits (601), Expect = 0.0
Identities = 610/613 (99%)
Strand = Plus / Minus
Query: 1 aaacctatgtggtgacctcaggggaatagctactcaaccagaagagatgaacacaaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaacctatgtggtgacctcaggggaatagctactcaaccagaagagatgaacacaaaact 554
Query: 61 tggcatcaaaggttcccaggccgatgagagtcaatgacgaagaaaaccaaggcaagtaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tggcatcaaaggttcccaggccgatgagagtcaatgacgaagaaaaccaaggcaagtaag 494
Query: 121 atactcttgactggatatgactatcagcagggttccagggaacaacatttctcctcggga 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atactcttgactggacatgactatcagcagggttccagggaacaacatttctcctcggga 434
Query: 181 cactcagctgatgagaccaggaagccagtcacatggccagcatcatcctcatctccacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cactcagctgatgagaccaggaagccagtcacatggccagcatcatcctcatctccacag 374
Query: 241 gtgtggggatcaattcctcccacaatgtagtggctcagtatccctggattacatgagaca 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 373 gtgtggggatcaattcctcccacactgtagtggctcagtatccctggattacatgagaca 314
Query: 301 gccatgtgccctgcactcttgcccagaacaagtgctccaacttcctctattgaacttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gccatgtgccctgcactcttgcccagaacaagtgctccaacttcctctattgaacttatt 254
Query: 361 atgagcagtctctccacctcttagttcaacttagacaatcactgctactgccaggctgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgagcagtctctccacctcttagttcaacttagacaatcactgctactgccaggctgct 194
Query: 421 gaataaaatacaagatgtccagttaaatatttcagataagcagcacaatttgggggtgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaataaaatacaagatgtccagttaaatatttcagataagcagcacaatttgggggtgta 134
Query: 481 tttgtcttggtacgatgctttgctaacgtggacaaatctctgggtttcatccccagcatt 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 133 tttgtcttggtacgatgctttgcttacgtggacaaatctctgggtttcatccccagcatt 74
Query: 541 gtataaatgcacacccatcatcccagcatctggggtttgaaggcaggaagactggaagct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 gtataaatgcacacccatcatcccagcatctggggtttgaaggcaggaagactggaagct 14
Query: 601 cagctttggctgc 613
|||||||||||||
Sbjct: 13 cagctttggctgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
