Query= MSMg01no112_l19.b1 MSMg01no112_l19.b1 CHROMAT_FILE:
MSMg01no112_l19.b1 PHD_FILE: MSMg01no112_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:59 2005
(593 letters)
>mm_chr1_123076873_123077864
Length = 992
Score = 1083 bits (560), Expect = 0.0
Identities = 582/592 (98%), Gaps = 7/592 (1%)
Strand = Plus / Plus
Query: 5 gaattcgcgccaccttctcgtagcttggaggacaaaaacacccgactggttccataaaag 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgcgccaccttctggtagcttggaggacaaaaacacccgactggttccataaaag 264
Query: 65 aattcttttattcacaattgtgtccggttggtatctgtaggcggagcgtccctctgcttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattcttttattcacaattgtgtccggttggtatctgtaggcggagcgtccctctgcttc 324
Query: 125 tctgaaaactcctggcagattccctacagcctggtttttataaagatgctttaaactagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgaaaactcctggcagattccctacagcctggtttttataaagatgctttaaactagg 384
Query: 185 aaaccagtttttttt-cctttatcttgtctttgaaagagctttctgaaatgaaagctaca 243
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 385 aaaccagtttttttttcctttatcttgtctttgaaagagctctctgaaatgaaagctgca 444
Query: 244 tctttacatgatagtttgtttactgaaccgtctctgcctggtat--ggttggacttcagt 301
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 tctttacatgatagttt----actgaaccgtctctgcctggtatatggttggacttcagt 500
Query: 302 aaaggatgcgtgtagtagactccgctatcccacatgcgcagtcctccggggaatgcttgc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggatgcgtgtagtagactccgctatcccacatgcgcagtcctccggggaatgcttgc 560
Query: 362 aaacaaaatggagcctataactgtagcagcagagaaacaaacgcctttccttcttgggtt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacaaaatggagcctataactgtagcagcagagaaacaaacgcctttccttcttgggtt 620
Query: 422 cataagacccccattgcccacaattaatcacaatgacatgttgtattcaagctctttggt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cataagacccccattgcccacaattaatcacaatgacatgttgtattcaagctctttggt 680
Query: 482 gaagtcggctaggttcacatacatctggtttttcatagatttcaatccattctgcaatac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaagtcggctaggttcacatacatctggtttttcatagatttcaatccattctgcaatac 740
Query: 542 ggacttcatgatattaaacttgttggtacagctcttgggtctccaaaattag 593
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggacttcatgatattaaacttgttggtacagctcttgggtctccaaaattag 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 992
Length adjustment: 10
Effective length of query: 583
Effective length of database: 982
Effective search space: 572506
Effective search space used: 572506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_l19.g1 MSMg01no112_l19.g1 CHROMAT_FILE:
MSMg01no112_l19.g1 PHD_FILE: MSMg01no112_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:59 2005
(246 letters)
>mm_chr1_123237216_123237860
Length = 645
Score = 460 bits (238), Expect = e-134
Identities = 244/246 (99%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 1 tgacggacagggtacagctgaagggtggtatgtgctacggagtgattctgatgctgcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgacggacagggtacagctgaagggtggtatgtgctacggagtgattctgatgctgcttg 386
Query: 61 gttagataggtgcacagccaaactggatcatacagaaagcacttaggactcagagtatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttagataggtgcacagccaaactggatcatacagaaagcacttaggactcagagtatgt 326
Query: 121 aactgaatgtaagagctcgtttgttgaggtgtggtatttacttttggaaaccaaagggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactgaatgtaagagctcgtttgttgaggtgtggtatttacttttggaaaccaaagggtc 266
Query: 181 aggccaaagcatgggaaaaaaaaaagcaaatgggaaagcacaaaagaagccatggaatga 240
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 aggccaaagcatgggaaaaacaaa-gcaaatgggaaagcacaaaagaagccatggaatga 207
Query: 241 gactgg 246
||||||
Sbjct: 206 gactgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space: 150732
Effective search space used: 150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
