CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAACAGAACCCACTCAAATTGCTGAGAGTACTTAAAAAATTGTT
TAAAGTCCTTCCTCATCAGAGAAATGCAAATTAAAGCAACCCTGAGATTT
CACCTCACTCCAAATGGCTAAGATCAAAACTCTAGTGAGAGCACATGCTG
CCTAGCATGTGGAGAATGAGAAACTTCTGGTGGGACTTCAAACTGGCACA
ACCACACTGAAAATCAATCTGGTTGTTCCTCAGAAAATTGAAAATTGTTC
TACCTGAAGACCCAGCTATACCACTTTCGGTCATATACCCAGAAGATCTT
CCAACAAAACCCAAAGACACATGATCCACCCAATTCATAGACTTAATTTA
AATGGTGAGAAGCTCAAAACAACCAAGATCTCCCTCAATGGAAGAATGTA
TACAAAAAATGTGGTTCTTTTATACAATGGAACACTATTCAGCTATGAAA
AATGAGGACATCATGAATTTTGCAGGCAGATGGGTGGTACAAAAAATATC
ATCCTGGGTGAAGTAGCCCAGATCCTAAAGGATATGTATGGTATGTATTC
ATTGTTAAGTTGTTACTGGCAAAAATATGTAGAATACCTAGGATACAACC
TACAGACCTTAAGAAGTGTAATAAGAGGAAGTCTCAACTAACCCAGACTC
CAGGGAGAACCCAGAGACTGAGCCACCAAACAGGA

CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCAGTGAAAAATATCTTTTTCA
TGTTGCTTCCTAGAATCAGAAGTCAGGAAACTCAATTTAAGAACAGTTTG
TCTCAACTCCTTAGAAGGCACACAAACCAGGCATCTCTGATAGCTTTCAA
TACAACAAACACTTGGAGGCCCAGGTTTTCAAGCATTAGTTCTCAACCTT
CCTAATGCTTCAACTCTTTAATATAGTCCCTCATGTTGTGTAACCCCCAA
CCATAAAGTTATTGCCATTGCTATTTCATAACTGAAATTTTCTACTGTTA
CAAATCATGATGTAAACACCTGAGTCAGTGATGTCTTTGCCACCCAAACA
TGCAGACTGGACATACAAACATTCCTATAGCCCTAAGACTCTGAAACGTC
AGGGTCAGGTGGACTCCTGATGTTTGCTGCCCAACCTGCCCAGCTGATAG
AGCAGCTCCAGATTCAAATGAGATAGTGTCTTAATGTAAAAATATTAGGT
GGCAAGTGATTAAAAAAAGACATACAAATGTCTATACACACACACACCCC
CCCCACACACACACAGACACCTGCTTGCCAATTCACTGATATAGACTTCT
TTGGCGGCTCTTTTCTGGGTTTCCACATCCAAACCTAGGGCTTCAACAGC
CACTAAATAAGTCATCTCCCTAGCCTACTAAGG

Query= MSMg01no112_n03.g1 MSMg01no112_n03.g1 CHROMAT_FILE:
MSMg01no112_n03.g1 PHD_FILE: MSMg01no112_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:05 2005
         (588 letters)



>mm_chr1_115850297_115851284
          Length = 988

 Score =  977 bits (505), Expect = 0.0
 Identities = 578/631 (91%), Gaps = 46/631 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcagtgaaaaatatctttttcatgttgcttcctagaatcagaagtcaggaaactcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcagtgaaaaatatctttttcatgttgcttcctagaatcagaagtcaggaaactcaat 260

                                                                       
Query: 61  ttaagaacagtttgtctcaactccttagaaggcacacaaaccaggcatctctgatagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagaacagtttgtctcaactccttagaaggcacacaaaccaggcatctctgatagctt 320

                                                                       
Query: 121 tcaatacaacaaacacttggaggcccaggttttcaagcattagttctcaaccttcctaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaatacaacaaacacttggaggcccaggttttcaagcattagttctcaaccttcctaat 380

                                                                       
Query: 181 gcttcaactctttaatatagtccctcatgttgtgtaacccccaaccataaagttattgcc 240
           ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 381 gcttcaactctttaatacagtccctcatgttgtgtaactcccaaccataaagttatttcc 440

                                                                       
Query: 241 attgctatttcataactgaaattttctactgttacaaatcatgatgtaaacacctgagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgctatttcataactgaaattttctactgttacaaatcatgatgtaaacacctgagtc 500

                                                                       
Query: 301 agtgatgtctttgccacccaaacatgcagactggacatacaaacattcctatagccctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgatgtctttgccacccaaacatgcagactggacatacaaacattcctatagccctaa 560

                                                                       
Query: 361 gactctgaaacgtcagggtcaggtggactcctgatgtttgctgcccaacctgcccagctg 420
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 gactctgaaaagtcagggtcaggtggacccctgatgtttgctgcccaacctgcccagctg 620

                                                                       
Query: 421 atagagcagctccagattcaaatgagatagtgtcttaatgtaaaaatattaggtggcaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagagcagctccagattcaaatgagatagtgtcttaatgtaaaaatattaggtggcaag 680

                                                                       
Query: 481 tgattaaaaaaagacat----------------------------------------aca 500
           |||||||||||||||||                                        |||
Sbjct: 681 tgattaaaaaaagacatcaagtgttaacctctgaacctcatatgcatgtgcatacataca 740

                                                                       
Query: 501 aatgtctatacacacacacaccccccc---cacacacacacagacacctgcttgccaatt 557
           ||||||||||||||| |   |||||||   ||||||||||||||||||||||||||||||
Sbjct: 741 aatgtctatacacaccc---cccccccacacacacacacacagacacctgcttgccaatt 797

                                          
Query: 558 cactgatatagacttctttggcggctctttt 588
           ||||||||||||||||||||| |||||||||
Sbjct: 798 cactgatatagacttctttggtggctctttt 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)