BAC Information

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BAC

Clone NameMSMg01-112P20
Chromosome1 (Build37)
Map Location 64,381,316 - 64,381,619
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1
Downstream geneLOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112P20.T7 (MSMg01no112_p20.b1)MSMg01-112P20.TJ (MSMg01no112_p20.g1)
ACCAG325253AG325254
length718795
length of high quality
(start - end)		385 (72 - 456)87 (75 - 161)
definitionCHROMAT_FILE: MSMg01no112_p20.b1 PHD_FILE: MSMg01no112_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:18 2005CHROMAT_FILE: MSMg01no112_p20.g1 PHD_FILE: MSMg01no112_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAGAGATCCGCGG
AATTCTCTTTTTTTGCTACAACATGCTGGAACAATCTTTATTGAAAACAC
AACTACACTACGCATCAGGCATTCCTGGAGAATGGGCACATGGACTTGAT
TGGGAGAGGTCATTGGCAACTGTGGGTTTTTCTTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGATATTTT
CTTTATTTACATTTCAAATGTTATCCCCTTTTCCCCTTTCCTGTTTCCCC
TCTGAAACCCCCCTATCCATTCTTTTCATCCCCCTCCTCACCAACTCATC
TACTCCTCTTCCTAGTCCCTGCATTCTCCTACATTGGAGCATAGAGCCTT
TACTGGACCAAGGGCCTCTCCTTCCATTGAGGTTTATGTTTGCAGGTTTG
GAATGTAGGGTGGGAGTCTGTTAGCTTCACAGTAGAGAGCTTAGCAGCAT
GAAAGTATCCTCTGCTACATATACTGCTAGAGCCATGGGTCCCTCCATGT
GCATTCTTTGGCCCGGTGGTTCAGCCCCAGGGAGCTTTGGGCGAACTGGT
TAGCCCATATTGTTTGTTCCTCCCATGGCGCTGTTCACCCCCTTCGCTCC
TTAGGTCACATCTTCCGCTCCTCCATTGAGGACCCTATGCCTAATCCAAT
GTATGATTGCGACTTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAAACCTGCTCAGCAGCCGGGCCCA
ATTCTCCTGAATACCTTTTTGAGTTATCAAAGCTCCAGGACCACCAGGAA
CACTGCTGATCCTGCAAAACTGCATTTATTAAACTCGCTGAGGAAGAGAA
ACCANCCCCTTGCCAGAGTCTCAGCACTCTCCAGAGGGGAAGAAGGAGGG
GGACGGCTCCCGTCTATCCGCTTGAAAGCGGGCAAAAGTNGTCCTGGGAG
AAGTTATAAATAGGGGAATTGGCAAGGGGGGGGGCCTGCATTTGAAAGGG
AAAATGTTTTCTGGGGTGGGGGGGGGGGGGGGAACCCTTTTTGGGGAAAA
AACCCTTTTAGTGGGGCCGGGGGCATATCCAGGGGTTGTAAAACCACCCC
GGTTCTGGAAATTTCAACAAAAATTTGAAAAAAAGAAAAAGGGTTTTTTT
TTTCTCCCGGGGGTTTATTTTTTTCTCTCAACAAAAAATTGTCGCCCCCT
CTTTAACCACTCTTTCCGAGAAAAAATAGCGCCAAGTTCGTTTTTTTAAT
AAACTCCCCCCCAACCCACATTCGAAAAAAAGGGCGCCCCGGCGGGGGGG
GGGGTGTGTTTTTCTTTTTAAAAAAAAAATTTCTTTTTTTTTTTTTTTCT
ACCGTCCCAAACAAAAATTTTTTCTTTCCCCCCGTTTTCTTTATTCTCAC
TACCCCCCATACTTTTTGTGTTTTCTGGCTTTCTCCTACCGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_p20.b1 MSMg01no112_p20.b1 CHROMAT_FILE:
MSMg01no112_p20.b1 PHD_FILE: MSMg01no112_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:18 2005
         (385 letters)



>mm_chr1_64381315_64382099
          Length = 785

 Score =  545 bits (282), Expect = e-159
 Identities = 299/308 (97%), Gaps = 7/308 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgctggaacaatctttattgaaaacacaactacactacgcatcaggcattcctggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 catgctggaacaatctttattgaaaacacaactacactacgcatcaggcattcctggaga 246

                                                                       
Query: 61  atgggcacatggacttgattgggagaggtcattggcaactgtgggtttttcttctctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgggcacatggacttgattgggagaggtcattggcaactgtgggtttttcttctctctc 186

                                                                       
Query: 121 tctctctctctctctctctctctctctctctctctctctctctctctctcagatattttc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tctttctctctctctctctctctctctctctctctctctctctctctctcagatattttc 126

                                                                       
Query: 181 tttatttacatttcaaatgttatccccttttcccctttcctgtttcccctctgaaacccc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 125 tttatttacatttcaaatgttatccccttttcccctttcctgtttcccctctgaaaaccc 66

                                                                       
Query: 241 cctatccattcttttc---atccccctcctcaccaactcatctactcctcttcctagtcc 297
           |||||||||||    |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cctatccattc----ccccatccccctcctcaccaactcatctactcctcttcctagtcc 10

                   
Query: 298 ctgcattc 305
           ||||||||
Sbjct: 9   ctgcattc 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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