AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTGTGATCGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCC
ATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTA
GTACTCCATTGTGTAGATGTACCATATTTTCTGTATCCATTCCTCTGTTG
AGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAATGCTGCT
ATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGG
ATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCA
ATTTTCTGAGGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTG
CACTCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCA
GCATCTGCTGTCACCTGAATTTTTGATCTTAGACATTCTGACTGGTGTGA
GGTGGAATCTTAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGAT
GTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGGGA
GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGG

CGATGATAGGAGAGCCTGGCGGCGCCTGTTCCCAAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCCTCTGCCTCTGAAGGTTGCTGGAATAAA
ATGTCTAAGATAAATTAAATGGGAGAAAAGATGTAAATGCGTTACTGTCC
TTAAGTACAGCCCAACATAATTCAGAAGCTTTTGGGCCCTACTCTCTCTA
GGGGAAGTGAAGTACAGAAAATGTCAGAAAACAGCATATTGGGTTTTTCT
CTTGTTGTTGTTGGGCTGTTTTGTTTTGTTTTGTTTTTATTGTTAACCTT
ACACAAGTGAGGCTCATCTTCATAGAGGACTTCTTAATTGAGAAAAGGCC
TCCATCAGACTGGCCTGTGGGCAAATCTGTTGGGCATTTTCTTGATTAAT
TATTGATGTGAGAAAGCCCAATGGAATGTGGACAATGTGATCCCTGGGTA
GGTAGTCCTTAGTCATATGAAAAAAACAAGCTGAGCCAACCATGGGGAGC
AAGCAAGAAAACAGCATTCTTCCATGGTCTCTGCTGTAACTCCTTCCCGG
TTCCTGTTTGCCAGGGTTACTGCCCTGATTTCCCTTCATGTTAGACTATA
AGTTGTGAGAGGGAATAAATAAAACCATCAAGTTGGTTTTGATCATGACA
TTCACCACATCATAGAAAACAAATTAGGACAAC

Query= MSMg01no113_a20.g1 MSMg01no113_a20.g1 CHROMAT_FILE:
MSMg01no113_a20.g1 PHD_FILE: MSMg01no113_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:23 2005
         (608 letters)



>mm_chr1_43894201_43895208
          Length = 1008

 Score =  847 bits (438), Expect = 0.0
 Identities = 458/466 (98%), Gaps = 6/466 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccctctg-cctctgaagg-ttgctggaataaaatgtctaagataaattaaatgggagaa 58
           |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tccctctgccctctgaaggtttgctggaataaaatgtctaagataaattaaatgggagaa 404

                                                                       
Query: 59  aag-atgtaaatgcgttactgtccttaagtacagcccaacataattcagaagcttttggg 117
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aagtatgtaaatgcgttactgtccttaagtacagcccaacataattcagaagcttttggg 344

                                                                       
Query: 118 ccctactctctctaggggaagtgaagtacagaaaatgtcagaaaacagcatattgggttt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 343 ccctactctctctaggggaagtgaagtacagaaaatgtcagaaaacagcatgttgggttt 284

                                                                       
Query: 178 ttctcttgttgttgttgggctgttttgttttgttttgtttttattgttaaccttacacaa 237
           |||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttctc---ttgttgttgggcttttttgttttgttttgtttttattgttaaccttacacaa 227

                                                                       
Query: 238 gtgaggctcatcttcatagaggacttcttaattgagaaaaggcctccatcagactggcct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gtgaggctcatcttcatagaggacttcttaattgagaaaaggcctccatcagactggcct 167

                                                                       
Query: 298 gtgggcaaatctgttgggcattttcttgattaattattgatgtgagaaagcccaatggaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gtgggcaaatctgttgggcattttcttgattaattattgatgtgagaaagcccaatggaa 107

                                                                       
Query: 358 tgtggacaatgtgatccctgggtaggtagtccttagtcatatgaaaaaaacaagctgagc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tgtggacaatgtgatccctgggtaggtagtccttagtcatatgaaaaaaacaagctgagc 47

                                                         
Query: 418 caaccatggggagcaagcaagaaaacagcattcttccatggtctct 463
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  caaccatggggagcaagcaagaaaacagcattcttccatggtctct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)