Query= MSMg01no113_c02.b1 MSMg01no113_c02.b1 CHROMAT_FILE:
MSMg01no113_c02.b1 PHD_FILE: MSMg01no113_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:28 2005
(344 letters)
>mm_chr1_53116684_53117428
Length = 745
Score = 621 bits (321), Expect = 0.0
Identities = 336/341 (98%), Gaps = 3/341 (0%)
Strand = Plus / Plus
Query: 5 gaattctatgcagaaac-tgaattttccagacaa-tctgactttataggcctgctctaat 62
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattctatgcagaaaaatgaattttccagacaaatctgactttataggcctgctctaat 264
Query: 63 attgtcttgtataaagagggccagatcacctcagggtgtctgctttgtgtctggttttcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgtcttgtataaagagggccagatcacctcagggtgtctgctttgtgtctggttttcc 324
Query: 123 ttcatctttaatggtgggcaaatctagtacattatggaagcccacttttttttttcctca 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 ttcatctttaatggtgggcaaatctagtacattatggaagcccacttttttttt-cctca 383
Query: 183 agagatatagatgcctcttaaaaatttgatgaaaatgcattaacttttcaagctactgag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agagatatagatgcctcttaaaaatttgatgaaaatgcattaacttttcaagctactgag 443
Query: 243 ctgcattttagttcactgaggcagtaaattgggtgtatactgtgcaggaatggtggtgac 302
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 ctgcattttagttcactgaggcagtaaattgggtgtatactgtacaggaatggtggtgac 503
Query: 303 ctaaaaataaatatttgatacaagccaccatagtctcttgg 343
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctaaaaataaatatttgatacaagccaccatagtctcttgg 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space: 246560
Effective search space used: 246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_c02.g1 MSMg01no113_c02.g1 CHROMAT_FILE:
MSMg01no113_c02.g1 PHD_FILE: MSMg01no113_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:29 2005
(494 letters)
>mm_chr1_53260505_53261398
Length = 894
Score = 853 bits (441), Expect = 0.0
Identities = 485/507 (95%), Gaps = 14/507 (2%)
Strand = Plus / Minus
Query: 1 tttggtactccataagtgataagttctgagtacagaaagaaaagatgcttccagcctctg 60
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 793 tttggtactccataagtgataagttctgagaacagaaagaaaagatgctcccagcctctg 734
Query: 61 tgaagttgggggctgtgcagactctgg------------aagaccctcagccttgcagca 108
|||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 733 tgaagttgggggctgtgcagactccggaggggaaggctcaagaccctcagccttgcagca 674
Query: 109 gcactttctattgctgccttgtggggagggttacttaagcattatcttgccttgtgtgtc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcactttctattgctgccttgtggggagggttacttaagcattatcttgccttgtgtgtc 614
Query: 169 ctaaattgtcagattactagttatggttagtaagcttcatctaaagttttctctagtagt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctaaattgtcagattactagttatggttagtaagcttcatctaaagttttctctagtagt 554
Query: 229 gttatggaatccatttagagcagatctcagaaactacacctgagacctgcggacagacgt 288
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 553 gttatggaatccatttagagcagatctcagaaactacgcctgagacctgtggacagacat 494
Query: 289 tctctgctggctgtcagtaaaagtgtgcagtggcctctcactgttgtgaggagtggttga 348
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 493 tctctgctggctgtcagtaaaagtgtgcagtggcctctcactattgtgaggagtggttga 434
Query: 349 gataatggctgttagagctcagggcaatgtccaacatgcagagagtgatttctctgttag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gataatggctgttagagctcagggcaatgtccaacatgcagagagtgatttctctgttag 374
Query: 409 cgtaatggagatttttaagctgtttatattatagaa-ggcagttttcatttgctctaagt 467
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 373 cgtaatggagatttttaagctgtttatattata-aatggcagttttcatttgctctaagt 315
Query: 468 cacttaagctgacttggatgtcagaaa 494
|||||||| ||||||||||||||||||
Sbjct: 314 cacttaagttgacttggatgtcagaaa 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
